PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63151-63200 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.5817 | 91.8058 | 99.6815 | 70.4887 | 605 | 54 | 626 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.5817 | 91.8058 | 99.6815 | 70.4887 | 605 | 54 | 626 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.1774 | 93.6073 | 92.7515 | 79.6508 | 820 | 56 | 627 | 49 | 48 | 97.9592 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 35.5104 | 33.6851 | 37.5449 | 56.5557 | 415 | 817 | 627 | 1043 | 747 | 71.6203 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e0 | het | 80.9130 | 78.6885 | 83.2669 | 93.4516 | 624 | 169 | 627 | 126 | 3 | 2.3810 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 82.2556 | 76.2295 | 89.3162 | 29.0192 | 93 | 29 | 627 | 75 | 75 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 78.4383 | 93.0670 | 67.7838 | 87.7240 | 792 | 59 | 627 | 298 | 27 | 9.0604 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.7698 | 26.2547 | 40.2181 | 60.9567 | 633 | 1778 | 627 | 932 | 870 | 93.3476 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6561 | 97.3479 | 100.0000 | 43.5644 | 624 | 17 | 627 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 29.2224 | 22.4601 | 41.8109 | 44.2465 | 619 | 2137 | 628 | 874 | 744 | 85.1259 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | het | 98.7816 | 97.7444 | 99.8410 | 62.2675 | 650 | 15 | 628 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | homalt | 32.9688 | 92.1283 | 20.0767 | 74.2148 | 632 | 54 | 628 | 2500 | 2465 | 98.6000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.8902 | 95.7121 | 90.2299 | 74.0007 | 625 | 28 | 628 | 68 | 67 | 98.5294 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7362 | 97.5039 | 100.0000 | 43.6266 | 625 | 16 | 628 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6378 | 95.3846 | 100.0000 | 23.5079 | 620 | 30 | 628 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | HG002complexvar | het | 98.8593 | 97.7444 | 100.0000 | 63.5519 | 650 | 15 | 628 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.0360 | 94.2922 | 91.8129 | 79.4100 | 826 | 50 | 628 | 56 | 55 | 98.2143 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.1110 | 94.2922 | 91.9591 | 79.3103 | 826 | 50 | 629 | 55 | 54 | 98.1818 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | het | 98.9362 | 97.8947 | 100.0000 | 62.7370 | 651 | 14 | 629 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | het | 98.7797 | 98.0451 | 99.5253 | 64.0909 | 652 | 13 | 629 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | * | 69.1865 | 57.9044 | 85.9290 | 78.9897 | 630 | 458 | 629 | 103 | 90 | 87.3786 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.7936 | 91.4119 | 98.4351 | 78.0939 | 628 | 59 | 629 | 10 | 5 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 36.4192 | 29.7932 | 46.8354 | 63.9946 | 634 | 1494 | 629 | 714 | 663 | 92.8571 | |
| ckim-dragen | INDEL | I16_PLUS | HG002complexvar | het | 99.0099 | 98.3459 | 99.6830 | 64.2493 | 654 | 11 | 629 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | het | 89.1566 | 80.9524 | 99.2114 | 85.2042 | 629 | 148 | 629 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | het | 75.7831 | 61.6063 | 98.4351 | 95.0187 | 629 | 392 | 629 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 88.4669 | 80.2296 | 98.5893 | 38.6538 | 629 | 155 | 629 | 9 | 8 | 88.8889 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 49.4821 | 41.3725 | 61.5460 | 81.3094 | 633 | 897 | 629 | 393 | 384 | 97.7099 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 49.4821 | 41.3725 | 61.5460 | 81.3094 | 633 | 897 | 629 | 393 | 384 | 97.7099 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | homalt | 64.3185 | 47.4398 | 99.8415 | 86.2587 | 630 | 698 | 630 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 85.4358 | 82.8084 | 88.2353 | 65.4739 | 631 | 131 | 630 | 84 | 79 | 94.0476 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.4161 | 95.5385 | 99.3691 | 21.9212 | 621 | 29 | 630 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | * | map_l150_m1_e0 | het | 70.8356 | 70.4094 | 71.2670 | 91.2380 | 602 | 253 | 630 | 254 | 71 | 27.9528 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.0439 | 75.2066 | 72.9167 | 67.8332 | 728 | 240 | 630 | 234 | 184 | 78.6325 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 82.5807 | 86.7710 | 78.7765 | 37.6168 | 610 | 93 | 631 | 170 | 95 | 55.8824 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002complexvar | het | 99.0895 | 98.1955 | 100.0000 | 64.9055 | 653 | 12 | 631 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.7987 | 95.6923 | 100.0000 | 22.5767 | 622 | 28 | 631 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.7383 | 91.7031 | 97.9814 | 80.1296 | 630 | 57 | 631 | 13 | 8 | 61.5385 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.7987 | 95.6923 | 100.0000 | 23.4223 | 622 | 28 | 631 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | HG002complexvar | het | 65.7371 | 54.8329 | 82.0546 | 48.1457 | 607 | 500 | 631 | 138 | 95 | 68.8406 | |
| astatham-gatk | INDEL | I16_PLUS | HG002complexvar | het | 99.2424 | 98.4962 | 100.0000 | 64.5705 | 655 | 10 | 631 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 89.7485 | 86.7769 | 92.9308 | 90.5838 | 630 | 96 | 631 | 48 | 4 | 8.3333 | |
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | het | 52.1057 | 35.3106 | 99.3701 | 97.9946 | 631 | 1156 | 631 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.7882 | 96.6046 | 73.9742 | 88.0348 | 882 | 31 | 631 | 222 | 19 | 8.5586 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.0791 | 54.5455 | 83.7981 | 68.9868 | 528 | 440 | 631 | 122 | 64 | 52.4590 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | * | 83.2414 | 77.4059 | 90.0285 | 94.1859 | 555 | 162 | 632 | 70 | 18 | 25.7143 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m0_e0 | * | 77.3981 | 72.8853 | 82.5065 | 89.4982 | 629 | 234 | 632 | 134 | 63 | 47.0149 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.5768 | 95.8462 | 99.3711 | 22.4390 | 623 | 27 | 632 | 4 | 4 | 100.0000 | |