PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62751-62800 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3971 | 98.8014 | 100.0000 | 18.3616 | 577 | 7 | 578 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 72.2264 | 69.9029 | 74.7097 | 69.5601 | 576 | 248 | 579 | 196 | 192 | 97.9592 | |
| ltrigg-rtg1 | SNP | ti | HG002compoundhet | hetalt | 99.9136 | 99.8273 | 100.0000 | 20.9016 | 578 | 1 | 579 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | * | hetalt | 99.7416 | 99.4845 | 100.0000 | 40.0000 | 579 | 3 | 579 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.4836 | 98.9726 | 100.0000 | 18.6798 | 578 | 6 | 579 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.4836 | 98.9726 | 100.0000 | 18.6798 | 578 | 6 | 579 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 54.1881 | 37.8431 | 95.3871 | 85.0345 | 579 | 951 | 579 | 28 | 21 | 75.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 54.1881 | 37.8431 | 95.3871 | 85.0345 | 579 | 951 | 579 | 28 | 21 | 75.0000 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | het | 93.6867 | 98.2964 | 89.4900 | 93.6438 | 577 | 10 | 579 | 68 | 2 | 2.9412 | |
| cchapple-custom | INDEL | I1_5 | segdup | het | 99.1750 | 98.6989 | 99.6558 | 95.3303 | 531 | 7 | 579 | 2 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | map_l250_m0_e0 | * | 40.4330 | 27.1194 | 79.4239 | 82.2628 | 579 | 1556 | 579 | 150 | 132 | 88.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | het | 98.0506 | 97.8003 | 98.3022 | 82.9226 | 578 | 13 | 579 | 10 | 1 | 10.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.2865 | 92.5982 | 98.1356 | 76.2957 | 613 | 49 | 579 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5701 | 99.1438 | 100.0000 | 17.6136 | 579 | 5 | 580 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 37.7278 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 39.9586 | 580 | 2 | 580 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 41.2361 | 580 | 2 | 580 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.5131 | 87.8165 | 100.0000 | 35.4839 | 555 | 77 | 580 | 0 | 0 | ||
| jli-custom | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 42.8150 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3103 | 98.6301 | 100.0000 | 25.8312 | 576 | 8 | 580 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5701 | 99.1438 | 100.0000 | 18.1946 | 579 | 5 | 580 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.7687 | 94.9675 | 98.6395 | 64.7059 | 585 | 31 | 580 | 8 | 8 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 45.8022 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 47.9821 | 580 | 2 | 580 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | * | hetalt | 99.5708 | 99.6564 | 99.4854 | 47.7130 | 580 | 2 | 580 | 3 | 3 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0025 | 80.9722 | 94.0032 | 86.2919 | 583 | 137 | 580 | 37 | 5 | 13.5135 | |
| ltrigg-rtg2 | SNP | ti | * | hetalt | 99.1449 | 99.4845 | 98.8075 | 41.3000 | 579 | 3 | 580 | 7 | 7 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l250_m2_e0 | homalt | 76.0969 | 62.0064 | 98.4746 | 89.6799 | 581 | 356 | 581 | 9 | 9 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 78.1643 | 64.5833 | 98.9779 | 55.8315 | 589 | 323 | 581 | 6 | 5 | 83.3333 | |
| gduggal-bwafb | SNP | ti | * | hetalt | 99.7425 | 99.8282 | 99.6569 | 53.0218 | 581 | 1 | 581 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | HG002compoundhet | homalt | 22.9146 | 84.6939 | 13.2497 | 72.0594 | 581 | 105 | 581 | 3804 | 3669 | 96.4511 | |
| rpoplin-dv42 | SNP | ti | * | hetalt | 99.4012 | 99.8282 | 98.9779 | 50.2542 | 581 | 1 | 581 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | SNP | ti | * | hetalt | 78.4605 | 99.8282 | 64.6274 | 61.2500 | 581 | 1 | 581 | 318 | 23 | 7.2327 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | homalt | 95.9878 | 93.3227 | 98.8095 | 92.9615 | 587 | 42 | 581 | 7 | 6 | 85.7143 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 66.3114 | 62.9921 | 70.0000 | 83.0785 | 480 | 282 | 581 | 249 | 22 | 8.8353 | |
| cchapple-custom | INDEL | * | map_l125_m0_e0 | het | 93.7970 | 95.7411 | 91.9304 | 89.7169 | 562 | 25 | 581 | 51 | 8 | 15.6863 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | het | 95.6215 | 97.1235 | 94.1653 | 84.4545 | 574 | 17 | 581 | 36 | 4 | 11.1111 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 69.5601 | 72.7617 | 66.6284 | 86.3856 | 577 | 216 | 581 | 291 | 251 | 86.2543 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5710 | 99.3151 | 99.8282 | 17.5637 | 580 | 4 | 581 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l150_m2_e0 | het | 77.6228 | 64.1280 | 98.3108 | 92.5120 | 581 | 325 | 582 | 10 | 4 | 40.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.8920 | 97.9730 | 99.8285 | 75.6067 | 580 | 12 | 582 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7425 | 99.4863 | 100.0000 | 18.9415 | 581 | 3 | 582 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.7242 | 88.2707 | 97.6510 | 77.3039 | 587 | 78 | 582 | 14 | 11 | 78.5714 | |
| ltrigg-rtg1 | SNP | ti | * | hetalt | 99.0637 | 99.8282 | 98.3108 | 41.4441 | 581 | 1 | 582 | 10 | 10 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8585 | 95.2922 | 98.4772 | 64.0511 | 587 | 29 | 582 | 9 | 9 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | het | 98.1450 | 98.4772 | 97.8151 | 83.8007 | 582 | 9 | 582 | 13 | 3 | 23.0769 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | het | 89.8148 | 98.4772 | 82.5532 | 89.6186 | 582 | 9 | 582 | 123 | 22 | 17.8862 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 24.2608 | 21.2264 | 28.3074 | 52.9088 | 585 | 2171 | 582 | 1474 | 1470 | 99.7286 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9392 | 95.2922 | 98.6441 | 64.3073 | 587 | 29 | 582 | 8 | 8 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6173 | 95.2922 | 97.9798 | 63.9563 | 587 | 29 | 582 | 12 | 11 | 91.6667 | |