PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62301-62350 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 33.4992 | 22.3466 | 66.8742 | 80.9806 | 539 | 1873 | 537 | 266 | 233 | 87.5940 | |
| gduggal-snapvard | SNP | tv | map_l250_m0_e0 | het | 73.2695 | 94.4056 | 59.8662 | 94.2393 | 540 | 32 | 537 | 360 | 2 | 0.5556 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.1650 | 95.9220 | 96.4093 | 67.7662 | 541 | 23 | 537 | 20 | 9 | 45.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.3516 | 98.3516 | 98.3516 | 75.3499 | 537 | 9 | 537 | 9 | 8 | 88.8889 | |
| ckim-isaac | SNP | ti | HG002compoundhet | hetalt | 96.2366 | 92.7461 | 100.0000 | 18.6364 | 537 | 42 | 537 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6228 | 98.7109 | 98.5348 | 85.9278 | 536 | 7 | 538 | 8 | 3 | 37.5000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 95.9835 | 98.7109 | 93.4028 | 88.9103 | 536 | 7 | 538 | 38 | 3 | 7.8947 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3536 | 99.6296 | 99.0792 | 82.1733 | 538 | 2 | 538 | 5 | 4 | 80.0000 | |
| jli-custom | SNP | tv | map_l250_m0_e0 | het | 96.2433 | 94.0559 | 98.5348 | 89.4472 | 538 | 34 | 538 | 8 | 2 | 25.0000 | |
| jpowers-varprowl | SNP | tv | map_l250_m0_e0 | het | 89.0728 | 94.0559 | 84.5912 | 95.1175 | 538 | 34 | 538 | 98 | 12 | 12.2449 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.1732 | 97.8142 | 98.5348 | 74.0741 | 537 | 12 | 538 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 57.3175 | 40.2014 | 99.8145 | 34.3484 | 519 | 772 | 538 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.5348 | 97.9964 | 99.0792 | 78.0340 | 538 | 11 | 538 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.2543 | 95.9220 | 96.5889 | 67.3888 | 541 | 23 | 538 | 19 | 9 | 47.3684 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.6276 | 525 | 0 | 539 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.7159 | 98.8950 | 98.5375 | 83.3079 | 537 | 6 | 539 | 8 | 3 | 37.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.4465 | 99.8148 | 99.0809 | 82.4799 | 539 | 1 | 539 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | * | 98.5355 | 98.8950 | 98.1785 | 84.8343 | 537 | 6 | 539 | 10 | 3 | 30.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.9948 | 94.8276 | 99.2634 | 69.4944 | 440 | 24 | 539 | 4 | 1 | 25.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.4465 | 99.8148 | 99.0809 | 82.3434 | 539 | 1 | 539 | 5 | 4 | 80.0000 | |
| ckim-isaac | SNP | ti | * | hetalt | 96.1641 | 92.6117 | 100.0000 | 30.2717 | 539 | 43 | 539 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5383 | 99.8148 | 99.2634 | 82.5064 | 539 | 1 | 539 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 85.1218 | 85.4985 | 84.7484 | 72.4437 | 566 | 96 | 539 | 97 | 47 | 48.4536 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 97.2027 | 98.8950 | 95.5674 | 89.4362 | 537 | 6 | 539 | 25 | 3 | 12.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 98.9891 | 99.0792 | 98.8991 | 83.0903 | 538 | 5 | 539 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 68.7717 | 525 | 0 | 539 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 29.9351 | 28.5016 | 31.5205 | 88.2158 | 525 | 1317 | 539 | 1171 | 52 | 4.4407 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3548 | 99.8148 | 98.8991 | 82.9794 | 539 | 1 | 539 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 99.4465 | 89.0239 | 0 | 0 | 539 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 99.4465 | 73.5867 | 0 | 0 | 539 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6471 | 99.1202 | 98.1785 | 85.0123 | 338 | 3 | 539 | 10 | 9 | 90.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.6122 | 99.4536 | 81.5431 | 79.4401 | 546 | 3 | 539 | 122 | 105 | 86.0656 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 66.5015 | 91.0448 | 52.3810 | 62.2662 | 549 | 54 | 539 | 490 | 476 | 97.1429 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | het | 91.8622 | 90.9710 | 92.7711 | 85.6224 | 534 | 53 | 539 | 42 | 9 | 21.4286 | |
| gduggal-bwaplat | INDEL | * | HG002compoundhet | homalt | 63.4446 | 78.5714 | 53.2020 | 84.3340 | 539 | 147 | 540 | 475 | 429 | 90.3158 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7176 | 98.5348 | 98.9011 | 76.6167 | 538 | 8 | 540 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5392 | 100.0000 | 99.0826 | 81.8454 | 540 | 0 | 540 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5392 | 100.0000 | 99.0826 | 82.0606 | 540 | 0 | 540 | 5 | 4 | 80.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5392 | 100.0000 | 99.0826 | 80.4869 | 540 | 0 | 540 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.4475 | 100.0000 | 98.9011 | 81.3078 | 540 | 0 | 540 | 6 | 4 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6285 | 99.0792 | 98.1818 | 85.0543 | 538 | 5 | 540 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5392 | 100.0000 | 99.0826 | 80.8099 | 540 | 0 | 540 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 89.8955 | 81.6456 | 100.0000 | 37.2822 | 516 | 116 | 540 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3834 | 99.0792 | 95.7447 | 89.2325 | 538 | 5 | 540 | 24 | 3 | 12.5000 | |
| cchapple-custom | SNP | tv | map_l250_m0_e0 | het | 93.7547 | 94.5804 | 92.9432 | 94.2561 | 541 | 31 | 540 | 41 | 8 | 19.5122 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.9011 | 98.3607 | 99.4475 | 79.0104 | 540 | 9 | 540 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | tv | map_l150_m0_e0 | homalt | 57.8158 | 40.6627 | 100.0000 | 71.4889 | 540 | 788 | 540 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.6310 | 100.0000 | 99.2647 | 80.8922 | 540 | 0 | 540 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 89.9913 | 81.8038 | 100.0000 | 35.7482 | 517 | 115 | 541 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.3841 | 93.4028 | 82.0941 | 65.3887 | 538 | 38 | 541 | 118 | 116 | 98.3051 | |