PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62201-62250 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.7811 | 99.8095 | 97.7737 | 75.2184 | 524 | 1 | 527 | 12 | 6 | 50.0000 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | homalt | 74.7625 | 67.9300 | 83.1230 | 59.6178 | 466 | 220 | 527 | 107 | 96 | 89.7196 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.6891 | 99.2467 | 98.1378 | 87.1161 | 527 | 4 | 527 | 10 | 4 | 40.0000 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.8935 | 85.7610 | 94.4444 | 82.5788 | 524 | 87 | 527 | 31 | 29 | 93.5484 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7942 | 85.6604 | 98.8743 | 47.1754 | 454 | 76 | 527 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 67.3819 | 51.3536 | 97.9554 | 43.6649 | 607 | 575 | 527 | 11 | 5 | 45.4545 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3574 | 99.5074 | 95.2984 | 84.1819 | 606 | 3 | 527 | 26 | 22 | 84.6154 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3193 | 96.8692 | 97.7737 | 89.6605 | 526 | 17 | 527 | 12 | 2 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.1071 | 92.2942 | 95.9927 | 56.4631 | 527 | 44 | 527 | 22 | 15 | 68.1818 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1533 | 99.2467 | 99.0602 | 83.0249 | 527 | 4 | 527 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0995 | 99.3432 | 94.9550 | 83.9270 | 605 | 4 | 527 | 28 | 20 | 71.4286 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1533 | 99.2467 | 99.0602 | 82.1116 | 527 | 4 | 527 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.9613 | 97.9439 | 100.0000 | 73.6658 | 524 | 11 | 528 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 62.3434 | 46.3628 | 95.1351 | 82.5307 | 529 | 612 | 528 | 27 | 19 | 70.3704 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3415 | 99.4350 | 99.2481 | 82.1297 | 528 | 3 | 528 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8262 | 99.5074 | 94.2857 | 83.6449 | 606 | 3 | 528 | 32 | 23 | 71.8750 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.1826 | 99.5074 | 94.9640 | 83.8841 | 606 | 3 | 528 | 28 | 21 | 75.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | homalt | 71.8856 | 68.2171 | 75.9712 | 82.1337 | 528 | 246 | 528 | 167 | 144 | 86.2275 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.8845 | 98.5348 | 97.2426 | 75.8758 | 538 | 8 | 529 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 80.5920 | 93.3333 | 70.9115 | 86.5051 | 672 | 48 | 529 | 217 | 24 | 11.0599 | |
| ciseli-custom | INDEL | * | map_l125_m0_e0 | * | 65.7143 | 59.9773 | 72.6648 | 92.6716 | 529 | 353 | 529 | 199 | 111 | 55.7789 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3427 | 99.6234 | 99.0637 | 82.1345 | 529 | 2 | 529 | 5 | 4 | 80.0000 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | het | 98.4123 | 97.7695 | 99.0637 | 96.0327 | 526 | 12 | 529 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2631 | 87.6866 | 95.1439 | 62.7595 | 470 | 66 | 529 | 27 | 23 | 85.1852 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 91.2220 | 89.6785 | 92.8196 | 89.5670 | 530 | 61 | 530 | 41 | 4 | 9.7561 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.4371 | 99.8117 | 99.0654 | 82.4417 | 530 | 1 | 530 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.9010 | 92.8196 | 92.9825 | 55.8140 | 530 | 41 | 530 | 40 | 38 | 95.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3440 | 99.8117 | 98.8806 | 82.8095 | 530 | 1 | 530 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.2620 | 98.5348 | 100.0000 | 70.7344 | 538 | 8 | 530 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 27.2634 | 21.9826 | 35.8835 | 56.2500 | 530 | 1881 | 530 | 947 | 929 | 98.0993 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.4371 | 99.8117 | 99.0654 | 82.2730 | 530 | 1 | 530 | 5 | 4 | 80.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5305 | 99.8117 | 99.2509 | 82.4688 | 530 | 1 | 530 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.4861 | 73.7415 | 86.2013 | 48.1481 | 542 | 193 | 531 | 85 | 81 | 95.2941 | |
| ciseli-custom | INDEL | D6_15 | HG002compoundhet | het | 21.2896 | 17.8947 | 26.2741 | 51.2425 | 153 | 702 | 531 | 1490 | 935 | 62.7517 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5314 | 100.0000 | 99.0672 | 80.3663 | 531 | 0 | 531 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5314 | 100.0000 | 99.0672 | 80.7125 | 531 | 0 | 531 | 5 | 4 | 80.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.4382 | 100.0000 | 98.8827 | 81.1975 | 531 | 0 | 531 | 6 | 4 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5314 | 100.0000 | 99.0672 | 81.9892 | 531 | 0 | 531 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5314 | 100.0000 | 99.0672 | 81.7749 | 531 | 0 | 531 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | * | 59.3006 | 61.3253 | 57.4054 | 86.4983 | 509 | 321 | 531 | 394 | 267 | 67.7665 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4475 | 98.9011 | 100.0000 | 72.3149 | 540 | 6 | 531 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.6248 | 100.0000 | 99.2523 | 80.8106 | 531 | 0 | 531 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m0_e0 | het | 86.9445 | 80.0338 | 95.1613 | 92.6675 | 473 | 118 | 531 | 27 | 20 | 74.0741 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | het | 42.3276 | 27.0229 | 97.6103 | 84.4394 | 531 | 1434 | 531 | 13 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3490 | 99.0741 | 99.6255 | 78.1237 | 535 | 5 | 532 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | ti | map_l250_m0_e0 | het | 67.5985 | 56.9593 | 83.1250 | 98.4261 | 532 | 402 | 532 | 108 | 85 | 78.7037 | |
| jlack-gatk | INDEL | I1_5 | segdup | het | 91.7231 | 98.6989 | 85.6683 | 96.3967 | 531 | 7 | 532 | 89 | 1 | 1.1236 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 75.0932 | 68.8312 | 82.6087 | 92.3470 | 530 | 240 | 532 | 112 | 24 | 21.4286 | |
| ciseli-custom | INDEL | I6_15 | HG002complexvar | homalt | 51.5500 | 45.4695 | 59.5078 | 51.7279 | 552 | 662 | 532 | 362 | 333 | 91.9890 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.1817 | 76.4706 | 88.8147 | 52.8718 | 533 | 164 | 532 | 67 | 66 | 98.5075 | |