PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61951-62000 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | het | 96.2144 | 97.5096 | 94.9533 | 90.7487 | 509 | 13 | 508 | 27 | 2 | 7.4074 | |
| ckim-gatk | INDEL | * | map_l150_m0_e0 | * | 94.2458 | 98.4436 | 90.3915 | 94.6603 | 506 | 8 | 508 | 54 | 4 | 7.4074 | |
| ciseli-custom | INDEL | I1_5 | segdup | het | 90.6052 | 93.4944 | 87.8893 | 95.0934 | 503 | 35 | 508 | 70 | 50 | 71.4286 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 96.3108 | 96.0452 | 96.5779 | 89.6130 | 510 | 21 | 508 | 18 | 3 | 16.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.1594 | 97.4952 | 98.8327 | 89.9117 | 506 | 13 | 508 | 6 | 2 | 33.3333 | |
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | * | 97.3151 | 98.4436 | 96.2121 | 92.3077 | 506 | 8 | 508 | 20 | 4 | 20.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | * | 97.7834 | 98.4436 | 97.1319 | 90.8917 | 506 | 8 | 508 | 15 | 4 | 26.6667 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | hetalt | 78.9505 | 73.7426 | 84.9498 | 82.4839 | 997 | 355 | 508 | 90 | 54 | 60.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | * | 95.4029 | 95.8569 | 94.9533 | 91.2223 | 509 | 22 | 508 | 27 | 7 | 25.9259 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 83.8465 | 88.9667 | 79.2835 | 61.5799 | 508 | 63 | 509 | 133 | 56 | 42.1053 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 83.5566 | 85.6419 | 81.5705 | 83.0803 | 507 | 85 | 509 | 115 | 98 | 85.2174 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 98.0706 | 98.6381 | 97.5096 | 90.6250 | 507 | 7 | 509 | 13 | 2 | 15.3846 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 98.3564 | 98.8327 | 97.8846 | 88.2671 | 508 | 6 | 509 | 11 | 3 | 27.2727 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.5312 | 73.0273 | 87.3070 | 53.3227 | 509 | 188 | 509 | 74 | 73 | 98.6486 | |
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 43.1111 | 37.0091 | 51.6227 | 61.5894 | 245 | 417 | 509 | 477 | 324 | 67.9245 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | homalt | 67.4017 | 92.6554 | 52.9657 | 79.0814 | 492 | 39 | 509 | 452 | 424 | 93.8053 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 57.4257 | 40.5021 | 98.6434 | 49.1124 | 484 | 711 | 509 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 55.3143 | 76.7267 | 43.2455 | 81.7971 | 511 | 155 | 509 | 668 | 383 | 57.3353 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 55.3143 | 76.7267 | 43.2455 | 81.7971 | 511 | 155 | 509 | 668 | 383 | 57.3353 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.8500 | 94.7664 | 99.0272 | 74.3896 | 507 | 28 | 509 | 5 | 4 | 80.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4648 | 98.0952 | 98.8372 | 65.8730 | 515 | 10 | 510 | 6 | 3 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | HG002compoundhet | * | 28.7549 | 21.7001 | 42.6065 | 32.2197 | 508 | 1833 | 510 | 687 | 477 | 69.4323 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | het | 97.7011 | 97.7011 | 97.7011 | 88.5827 | 510 | 12 | 510 | 12 | 2 | 16.6667 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | het | 81.7401 | 69.9725 | 98.2659 | 88.4897 | 508 | 218 | 510 | 9 | 3 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.0504 | 96.0452 | 98.0769 | 77.1629 | 510 | 21 | 510 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | het | 94.8726 | 96.9349 | 92.8962 | 88.6523 | 506 | 16 | 510 | 39 | 4 | 10.2564 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 94.0939 | 98.8327 | 89.7887 | 93.3263 | 508 | 6 | 510 | 58 | 4 | 6.8966 | |
| jpowers-varprowl | INDEL | I1_5 | segdup | het | 91.4882 | 95.1673 | 88.0829 | 95.5527 | 512 | 26 | 510 | 69 | 56 | 81.1594 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m0_e0 | * | 93.4216 | 94.4751 | 92.3913 | 87.7849 | 513 | 30 | 510 | 42 | 14 | 33.3333 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 34.6127 | 23.8776 | 62.8853 | 50.2149 | 117 | 373 | 510 | 301 | 47 | 15.6146 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e1 | het | 97.0504 | 97.7011 | 96.4083 | 88.1443 | 510 | 12 | 510 | 19 | 1 | 5.2632 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.0939 | 89.9412 | 98.6486 | 45.1271 | 4891 | 547 | 511 | 7 | 7 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | het | 89.6534 | 98.6590 | 82.1543 | 92.0895 | 515 | 7 | 511 | 111 | 13 | 11.7117 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 74.3814 | 59.9765 | 97.8927 | 91.3619 | 511 | 341 | 511 | 11 | 10 | 90.9091 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.2587 | 95.3704 | 99.2233 | 74.6305 | 515 | 25 | 511 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | HG002compoundhet | het | 74.0633 | 83.6471 | 66.4499 | 67.5390 | 711 | 139 | 511 | 258 | 225 | 87.2093 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7696 | 99.0826 | 98.4586 | 84.5167 | 324 | 3 | 511 | 8 | 7 | 87.5000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.8406 | 98.8417 | 98.8395 | 79.6936 | 512 | 6 | 511 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 93.5024 | 99.0272 | 88.5615 | 93.0997 | 509 | 5 | 511 | 66 | 4 | 6.0606 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3638 | 98.4586 | 98.2692 | 90.4535 | 511 | 8 | 511 | 9 | 2 | 22.2222 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | het | 97.7008 | 97.5096 | 97.8927 | 87.5328 | 509 | 13 | 511 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 71.2817 | 75.3968 | 67.5926 | 74.1362 | 475 | 155 | 511 | 245 | 114 | 46.5306 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.5191 | 96.2335 | 98.8395 | 76.2735 | 511 | 20 | 511 | 6 | 5 | 83.3333 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8684 | 98.0732 | 95.6929 | 93.1327 | 509 | 10 | 511 | 23 | 3 | 13.0435 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 95.3323 | 98.0732 | 92.7405 | 92.6709 | 509 | 10 | 511 | 40 | 4 | 10.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 90.3609 | 99.0272 | 83.0894 | 92.4149 | 509 | 5 | 511 | 104 | 4 | 3.8462 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | het | 98.5517 | 99.0272 | 98.0806 | 87.1263 | 509 | 5 | 511 | 10 | 2 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | * | 98.6486 | 98.4586 | 98.8395 | 90.0500 | 511 | 8 | 511 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3216 | 99.0347 | 99.6101 | 75.9719 | 513 | 5 | 511 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 63.4096 | 46.8051 | 98.2726 | 36.6180 | 586 | 666 | 512 | 9 | 6 | 66.6667 | |