PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61851-61900 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.1230 | 91.0747 | 83.5000 | 78.7460 | 500 | 49 | 501 | 99 | 52 | 52.5253 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | het | 63.6557 | 48.8737 | 91.2568 | 79.7342 | 499 | 522 | 501 | 48 | 14 | 29.1667 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | homalt | 98.6220 | 98.4283 | 98.8166 | 82.4931 | 501 | 8 | 501 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 98.9129 | 98.8142 | 99.0119 | 87.8511 | 500 | 6 | 501 | 5 | 2 | 40.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | het | 71.5885 | 75.0376 | 68.4426 | 63.7803 | 499 | 166 | 501 | 231 | 229 | 99.1342 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | * | 94.2615 | 92.2652 | 96.3462 | 85.0575 | 501 | 42 | 501 | 19 | 12 | 63.1579 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3062 | 98.8166 | 99.8008 | 85.8631 | 501 | 6 | 501 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | homalt | 98.4283 | 98.4283 | 98.4283 | 84.0788 | 501 | 8 | 501 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.5045 | 99.0138 | 100.0000 | 86.4030 | 502 | 5 | 502 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e0 | het | 97.6654 | 97.6654 | 97.6654 | 88.5803 | 502 | 12 | 502 | 12 | 2 | 16.6667 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4059 | 99.0138 | 99.8012 | 86.2267 | 502 | 5 | 502 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m0_e0 | * | 96.9996 | 97.2763 | 96.7245 | 93.1872 | 500 | 14 | 502 | 17 | 4 | 23.5294 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 51.7650 | 93.7381 | 35.7550 | 67.8055 | 494 | 33 | 502 | 902 | 894 | 99.1131 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0067 | 98.2249 | 99.8012 | 86.1050 | 498 | 9 | 502 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4059 | 99.0138 | 99.8012 | 86.2868 | 502 | 5 | 502 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 57.9234 | 60.5313 | 55.5310 | 45.5422 | 319 | 208 | 502 | 402 | 297 | 73.8806 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.2112 | 95.2919 | 99.2095 | 74.5984 | 506 | 25 | 502 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 46.7905 | 38.6828 | 59.1981 | 64.3248 | 511 | 810 | 502 | 346 | 329 | 95.0867 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5573 | 98.6641 | 94.5386 | 64.0244 | 517 | 7 | 502 | 29 | 9 | 31.0345 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | homalt | 98.5280 | 98.6248 | 98.4314 | 85.7978 | 502 | 7 | 502 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e0 | het | 97.0048 | 97.6654 | 96.3532 | 88.1294 | 502 | 12 | 502 | 19 | 1 | 5.2632 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4059 | 99.0138 | 99.8012 | 86.4347 | 502 | 5 | 502 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4059 | 99.0138 | 99.8012 | 86.4311 | 502 | 5 | 502 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.3350 | 98.6248 | 98.0469 | 84.7483 | 502 | 7 | 502 | 10 | 5 | 50.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4059 | 99.0138 | 99.8012 | 86.2267 | 502 | 5 | 502 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 95.8267 | 95.6693 | 95.9847 | 87.8457 | 486 | 22 | 502 | 21 | 5 | 23.8095 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 94.8879 | 97.0817 | 92.7911 | 88.6129 | 499 | 15 | 502 | 39 | 4 | 10.2564 | |
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | homalt | 98.5280 | 98.6248 | 98.4314 | 82.7119 | 502 | 7 | 502 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 84.8955 | 75.4173 | 97.0986 | 64.6133 | 497 | 162 | 502 | 15 | 11 | 73.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 84.8955 | 75.4173 | 97.0986 | 64.6133 | 497 | 162 | 502 | 15 | 11 | 73.3333 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 47.8252 | 42.6757 | 54.3879 | 44.5978 | 504 | 677 | 502 | 421 | 421 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.4676 | 94.6746 | 61.3692 | 51.5690 | 160 | 9 | 502 | 316 | 146 | 46.2025 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9728 | 84.5626 | 98.4344 | 65.7965 | 493 | 90 | 503 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7917 | 99.5842 | 100.0000 | 51.7737 | 479 | 2 | 503 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.4894 | 84.3750 | 88.7125 | 60.9235 | 486 | 90 | 503 | 64 | 41 | 64.0625 | |
| jli-custom | INDEL | * | map_l100_m0_e0 | homalt | 98.6275 | 98.8212 | 98.4344 | 83.3605 | 503 | 6 | 503 | 8 | 5 | 62.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.4727 | 95.9770 | 99.0157 | 86.2740 | 501 | 21 | 503 | 5 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | * | 97.5703 | 97.4708 | 97.6699 | 99.3659 | 501 | 13 | 503 | 12 | 4 | 33.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | * | 97.0975 | 96.5318 | 97.6699 | 88.6863 | 501 | 18 | 503 | 12 | 1 | 8.3333 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.7471 | 97.9048 | 99.6040 | 63.8511 | 514 | 11 | 503 | 2 | 1 | 50.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7242 | 99.2110 | 98.2422 | 85.7580 | 503 | 4 | 503 | 9 | 2 | 22.2222 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.7338 | 98.0695 | 99.4071 | 79.0129 | 508 | 10 | 503 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | * | 95.4459 | 94.7269 | 96.1759 | 90.8774 | 503 | 28 | 503 | 20 | 5 | 25.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.0609 | 96.5649 | 99.6040 | 59.4051 | 506 | 18 | 503 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9411 | 98.0952 | 99.8016 | 65.5738 | 515 | 10 | 503 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | * | 52.3530 | 38.8846 | 80.0955 | 45.7686 | 509 | 800 | 503 | 125 | 124 | 99.2000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | het | 89.5859 | 98.6381 | 82.0555 | 92.0606 | 507 | 7 | 503 | 110 | 12 | 10.9091 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | * | 94.4555 | 97.4708 | 91.6211 | 94.8011 | 501 | 13 | 503 | 46 | 4 | 8.6957 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | homalt | 99.0173 | 99.2141 | 98.8212 | 82.1404 | 505 | 4 | 503 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7917 | 99.5842 | 100.0000 | 52.9026 | 479 | 2 | 503 | 0 | 0 | ||