PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61551-61600 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1888 | 99.1803 | 95.2756 | 71.1364 | 484 | 4 | 484 | 24 | 19 | 79.1667 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 24.6578 | 16.3033 | 50.5747 | 64.7773 | 486 | 2495 | 484 | 473 | 460 | 97.2516 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | * | 97.5076 | 96.4637 | 98.5743 | 79.6096 | 491 | 18 | 484 | 7 | 1 | 14.2857 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9804 | 98.5801 | 99.3840 | 55.4845 | 486 | 7 | 484 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 96.2305 | 96.0474 | 96.4143 | 88.2381 | 486 | 20 | 484 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9940 | 99.1803 | 94.9020 | 71.6981 | 484 | 4 | 484 | 26 | 22 | 84.6154 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.9798 | 99.3852 | 96.6135 | 72.1575 | 485 | 3 | 485 | 17 | 16 | 94.1176 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | * | 97.5855 | 97.7823 | 97.3896 | 88.3263 | 485 | 11 | 485 | 13 | 1 | 7.6923 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.7462 | 97.6596 | 95.8498 | 63.4393 | 459 | 11 | 485 | 21 | 18 | 85.7143 | |
| eyeh-varpipe | INDEL | I6_15 | HG002complexvar | hetalt | 50.4268 | 34.5053 | 93.6293 | 59.7826 | 422 | 801 | 485 | 33 | 33 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.9798 | 99.3852 | 96.6135 | 70.8648 | 485 | 3 | 485 | 17 | 16 | 94.1176 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | het | 97.4818 | 97.1831 | 97.7823 | 85.5182 | 483 | 14 | 485 | 11 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0552 | 97.3435 | 78.7338 | 77.6244 | 513 | 14 | 485 | 131 | 131 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0807 | 99.5893 | 98.5772 | 65.8570 | 485 | 2 | 485 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | * | 97.4111 | 96.4637 | 98.3773 | 78.8139 | 491 | 18 | 485 | 8 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.3257 | 95.6607 | 97.0000 | 82.2127 | 485 | 22 | 485 | 15 | 15 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8196 | 92.1495 | 99.7942 | 70.9504 | 493 | 42 | 485 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | homalt | 79.5902 | 79.5417 | 79.6388 | 77.9587 | 486 | 125 | 485 | 124 | 118 | 95.1613 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e1 | homalt | 98.5772 | 98.5772 | 98.5772 | 88.8207 | 485 | 7 | 485 | 7 | 5 | 71.4286 | |
| gduggal-snapplat | INDEL | I1_5 | HG002compoundhet | het | 19.8395 | 43.8824 | 12.8171 | 74.6754 | 373 | 477 | 485 | 3299 | 129 | 3.9103 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m1_e0 | * | 96.6092 | 95.6522 | 97.5855 | 92.5754 | 484 | 22 | 485 | 12 | 2 | 16.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.0971 | 95.6607 | 98.5772 | 82.2319 | 485 | 22 | 485 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | * | map_l125_m0_e0 | homalt | 96.8008 | 97.1831 | 96.4215 | 89.3815 | 276 | 8 | 485 | 18 | 16 | 88.8889 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | * | 97.8809 | 97.7823 | 97.9798 | 88.1437 | 485 | 11 | 485 | 10 | 3 | 30.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 39.9506 | 39.3669 | 40.5518 | 64.0084 | 485 | 747 | 485 | 711 | 356 | 50.0703 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.3619 | 97.5940 | 91.3371 | 87.9208 | 649 | 16 | 485 | 46 | 31 | 67.3913 | |
| jlack-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.4772 | 98.5772 | 98.3773 | 89.0274 | 485 | 7 | 485 | 8 | 5 | 62.5000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 85.6972 | 75.6757 | 98.7780 | 69.6726 | 504 | 162 | 485 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 85.6972 | 75.6757 | 98.7780 | 69.6726 | 504 | 162 | 485 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8435 | 94.7977 | 98.9796 | 86.8102 | 492 | 27 | 485 | 5 | 1 | 20.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 81.2115 | 77.3016 | 85.5379 | 66.6471 | 487 | 143 | 485 | 82 | 76 | 92.6829 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8224 | 91.5254 | 96.2376 | 90.4986 | 486 | 45 | 486 | 19 | 11 | 57.8947 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 97.9839 | 97.9839 | 97.9839 | 87.4399 | 486 | 10 | 486 | 10 | 3 | 30.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 50.5691 | 51.7504 | 49.4405 | 81.2333 | 340 | 317 | 486 | 497 | 6 | 1.2072 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.8830 | 97.7823 | 97.9839 | 88.0998 | 485 | 11 | 486 | 10 | 4 | 40.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | homalt | 98.6802 | 98.7805 | 98.5801 | 89.0274 | 486 | 6 | 486 | 7 | 6 | 85.7143 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.1735 | 97.7444 | 89.0110 | 87.2161 | 650 | 15 | 486 | 60 | 52 | 86.6667 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7947 | 99.7947 | 99.7947 | 67.0946 | 486 | 1 | 486 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.9972 | 95.6522 | 98.3806 | 89.7744 | 484 | 22 | 486 | 8 | 2 | 25.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.1319 | 69.2308 | 95.1076 | 60.6014 | 513 | 228 | 486 | 25 | 9 | 36.0000 | |
| qzeng-custom | INDEL | D6_15 | map_siren | * | 82.8301 | 89.5874 | 77.0206 | 83.5033 | 456 | 53 | 486 | 145 | 21 | 14.4828 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 57.3427 | 40.2628 | 99.5902 | 49.2196 | 521 | 773 | 486 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | homalt | 98.8810 | 98.7805 | 98.9817 | 89.8846 | 486 | 6 | 486 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.8852 | 99.5902 | 96.2376 | 72.0686 | 486 | 2 | 486 | 19 | 18 | 94.7368 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 82.4610 | 70.7692 | 98.7805 | 27.7533 | 460 | 190 | 486 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.7805 | 98.7805 | 98.7805 | 89.8661 | 486 | 6 | 486 | 6 | 4 | 66.6667 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.8852 | 99.5902 | 96.2376 | 72.0686 | 486 | 2 | 486 | 19 | 18 | 94.7368 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8974 | 100.0000 | 99.7951 | 68.0419 | 487 | 0 | 487 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8974 | 100.0000 | 99.7951 | 67.6178 | 487 | 0 | 487 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.6974 | 88.3019 | 99.7951 | 47.9744 | 468 | 62 | 487 | 1 | 1 | 100.0000 | |