PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61501-61550 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3814 | 98.9733 | 99.7930 | 65.0253 | 482 | 5 | 482 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | het | 97.8610 | 96.5795 | 99.1770 | 86.8328 | 480 | 17 | 482 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.6365 | 93.2331 | 98.1670 | 73.3875 | 124 | 9 | 482 | 9 | 6 | 66.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.9055 | 69.1535 | 84.1187 | 50.6034 | 482 | 215 | 482 | 91 | 88 | 96.7033 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0040 | 98.0276 | 100.0000 | 80.7123 | 497 | 10 | 482 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2646 | 97.5659 | 98.9733 | 55.4437 | 481 | 12 | 482 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4722 | 97.1774 | 97.7688 | 87.3525 | 482 | 14 | 482 | 11 | 4 | 36.3636 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.2623 | 98.5801 | 92.1606 | 58.7214 | 486 | 7 | 482 | 41 | 1 | 2.4390 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 92.3613 | 88.6473 | 96.4000 | 70.3264 | 367 | 47 | 482 | 18 | 17 | 94.4444 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.6694 | 97.7688 | 99.5868 | 58.0952 | 482 | 11 | 482 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 78.3674 | 76.9841 | 79.8013 | 72.5330 | 485 | 145 | 482 | 122 | 85 | 69.6721 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e0 | het | 94.2428 | 98.1891 | 90.6015 | 91.4662 | 488 | 9 | 482 | 50 | 22 | 44.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | homalt | 98.0671 | 97.9675 | 98.1670 | 90.1524 | 482 | 10 | 482 | 9 | 6 | 66.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m1_e0 | * | 96.7936 | 95.4545 | 98.1707 | 88.6006 | 483 | 23 | 483 | 9 | 2 | 22.2222 | |
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | * | 85.7904 | 93.9689 | 78.9216 | 93.5231 | 483 | 31 | 483 | 129 | 24 | 18.6047 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.2447 | 68.7055 | 99.3827 | 61.1200 | 483 | 220 | 483 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.0644 | 96.7807 | 99.3827 | 86.9285 | 481 | 16 | 483 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 64.4901 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 64.4118 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 64.5161 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m1_e0 | * | 93.8776 | 95.4545 | 92.3518 | 91.7142 | 483 | 23 | 483 | 40 | 11 | 27.5000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 77.3737 | 66.0300 | 93.4236 | 68.0667 | 484 | 249 | 483 | 34 | 28 | 82.3529 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | * | 95.2705 | 95.6522 | 94.8919 | 90.2115 | 484 | 22 | 483 | 26 | 7 | 26.9231 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.1030 | 98.4221 | 99.7934 | 73.4358 | 499 | 8 | 483 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m0_e0 | homalt | 78.0848 | 77.2655 | 78.9216 | 92.3251 | 486 | 143 | 483 | 129 | 86 | 66.6667 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | het | 95.2612 | 94.8819 | 95.6436 | 89.4550 | 482 | 26 | 483 | 22 | 3 | 13.6364 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.6047 | 90.1119 | 97.3790 | 63.5026 | 483 | 53 | 483 | 13 | 11 | 84.6154 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 67.2973 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e1 | homalt | 98.7709 | 97.9675 | 99.5876 | 84.9098 | 482 | 10 | 483 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.8578 | 97.1545 | 98.5714 | 57.5022 | 478 | 14 | 483 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | het | 96.0834 | 92.9961 | 99.3827 | 79.1327 | 478 | 36 | 483 | 3 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 77.3118 | 66.0300 | 93.2432 | 67.5642 | 484 | 249 | 483 | 35 | 30 | 85.7143 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.5714 | 98.1707 | 98.9754 | 89.5771 | 483 | 9 | 483 | 5 | 4 | 80.0000 | |
| qzeng-custom | SNP | tv | map_l250_m0_e0 | * | 73.9185 | 63.3987 | 88.6239 | 97.9721 | 485 | 280 | 483 | 62 | 45 | 72.5806 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 83.9484 | 89.1626 | 79.3103 | 79.1581 | 543 | 66 | 483 | 126 | 115 | 91.2698 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 79.5886 | 67.1053 | 97.7778 | 44.5067 | 255 | 125 | 484 | 11 | 8 | 72.7273 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 61.7012 | 83.4697 | 48.9383 | 56.4509 | 510 | 101 | 484 | 505 | 504 | 99.8020 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | het | 97.1976 | 95.6693 | 98.7755 | 80.7617 | 486 | 22 | 484 | 6 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | * | 89.2989 | 94.1634 | 84.9123 | 96.4917 | 484 | 30 | 484 | 86 | 20 | 23.2558 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.0920 | 69.5839 | 88.9706 | 48.6792 | 485 | 212 | 484 | 60 | 59 | 98.3333 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | * | 97.7751 | 97.3790 | 98.1744 | 86.5042 | 483 | 13 | 484 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | * | map_l150_m2_e1 | homalt | 98.4741 | 98.3740 | 98.5743 | 89.3400 | 484 | 8 | 484 | 7 | 4 | 57.1429 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.4741 | 98.3740 | 98.5743 | 89.6632 | 484 | 8 | 484 | 7 | 4 | 57.1429 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.3843 | 99.1803 | 95.6522 | 71.9357 | 484 | 4 | 484 | 22 | 18 | 81.8182 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m0_e0 | * | 96.4143 | 97.5806 | 95.2756 | 92.2773 | 484 | 12 | 484 | 24 | 3 | 12.5000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 69.2265 | 56.5217 | 89.2989 | 95.0257 | 481 | 370 | 484 | 58 | 10 | 17.2414 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 91.6227 | 96.5092 | 87.2072 | 59.1912 | 470 | 17 | 484 | 71 | 70 | 98.5915 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | het | 96.4880 | 94.4882 | 98.5743 | 86.6285 | 480 | 28 | 484 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.5324 | 69.4405 | 95.8416 | 48.3640 | 484 | 213 | 484 | 21 | 19 | 90.4762 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.3740 | 98.3740 | 98.3740 | 59.0341 | 484 | 8 | 484 | 8 | 7 | 87.5000 | |