PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61401-61450 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 28.6628 | 18.2874 | 66.2500 | 62.2444 | 504 | 2252 | 477 | 243 | 131 | 53.9095 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | het | 94.1757 | 98.1481 | 90.5123 | 91.5531 | 477 | 9 | 477 | 50 | 17 | 34.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 97.9436 | 98.5477 | 97.3469 | 90.2488 | 475 | 7 | 477 | 13 | 2 | 15.3846 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4520 | 98.1481 | 98.7578 | 86.5497 | 477 | 9 | 477 | 6 | 1 | 16.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5833 | 99.3763 | 99.7912 | 54.8113 | 478 | 3 | 478 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 75.9880 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e1 | het | 95.7853 | 93.8976 | 97.7505 | 92.7437 | 477 | 31 | 478 | 11 | 1 | 9.0909 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 76.0359 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 98.3497 | 97.9424 | 98.7603 | 87.9181 | 476 | 10 | 478 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8955 | 100.0000 | 99.7912 | 74.9083 | 478 | 0 | 478 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 74.8818 | 478 | 0 | 478 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 75.7331 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 94.8373 | 97.9424 | 91.9231 | 91.0821 | 476 | 10 | 478 | 42 | 2 | 4.7619 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8955 | 100.0000 | 99.7912 | 74.6829 | 478 | 0 | 478 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4509 | 97.9424 | 98.9648 | 85.0418 | 476 | 10 | 478 | 5 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 93.8151 | 98.7552 | 89.3458 | 92.9596 | 476 | 6 | 478 | 57 | 4 | 7.0175 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 75.9519 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 96.6592 | 97.9424 | 95.4092 | 91.8124 | 476 | 10 | 478 | 23 | 1 | 4.3478 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.5510 | 97.9508 | 97.1545 | 69.9817 | 478 | 10 | 478 | 14 | 12 | 85.7143 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8955 | 100.0000 | 99.7912 | 75.1685 | 478 | 0 | 478 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | * | 95.2820 | 92.2179 | 98.5567 | 87.0112 | 474 | 40 | 478 | 7 | 2 | 28.5714 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6000 | 97.2387 | 100.0000 | 79.3163 | 493 | 14 | 478 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | segdup | homalt | 99.1688 | 99.7886 | 98.5567 | 91.3377 | 472 | 1 | 478 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.3763 | 99.3763 | 99.3763 | 54.9625 | 478 | 3 | 478 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 75.9398 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 75.9639 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m1_e0 | het | 98.1477 | 97.9424 | 98.3539 | 86.9705 | 476 | 10 | 478 | 8 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.3763 | 96.3910 | 88.6827 | 87.4183 | 641 | 24 | 478 | 61 | 53 | 86.8852 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6872 | 99.3763 | 100.0000 | 45.8664 | 478 | 3 | 478 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | HG002compoundhet | hetalt | 28.4846 | 16.7531 | 95.0298 | 30.9066 | 323 | 1605 | 478 | 25 | 25 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | het | 83.7221 | 81.0345 | 86.5942 | 94.7283 | 423 | 99 | 478 | 74 | 17 | 22.9730 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 52.6126 | 49.5308 | 56.1033 | 72.8835 | 475 | 484 | 478 | 374 | 353 | 94.3850 | |
| cchapple-custom | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 91.5709 | 83.0574 | 0 | 0 | 478 | 44 | 6 | 13.6364 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3653 | 95.6250 | 99.1701 | 81.0311 | 153 | 7 | 478 | 4 | 2 | 50.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m0_e0 | * | 96.1805 | 96.5726 | 95.7916 | 89.1262 | 479 | 17 | 478 | 21 | 3 | 14.2857 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 75.9880 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5510 | 97.1545 | 97.9508 | 60.7085 | 478 | 14 | 478 | 10 | 7 | 70.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 75.5601 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4634 | 89.3657 | 97.9550 | 62.9826 | 479 | 57 | 479 | 10 | 9 | 90.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 98.9652 | 98.3539 | 99.5842 | 84.9452 | 478 | 8 | 479 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.3176 | 88.2784 | 98.9669 | 69.3477 | 482 | 64 | 479 | 5 | 1 | 20.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4599 | 98.5626 | 98.3573 | 64.0590 | 480 | 7 | 479 | 8 | 7 | 87.5000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | het | 98.4563 | 98.9627 | 97.9550 | 86.5733 | 477 | 5 | 479 | 10 | 2 | 20.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.2526 | 98.1481 | 98.3573 | 87.3539 | 477 | 9 | 479 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 89.8669 | 98.9627 | 82.3024 | 91.9768 | 477 | 5 | 479 | 103 | 4 | 3.8835 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 69.4218 | 66.5306 | 72.5758 | 57.3368 | 489 | 246 | 479 | 181 | 180 | 99.4475 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.8674 | 98.7680 | 98.9669 | 64.2541 | 481 | 6 | 479 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 77.9566 | 64.5649 | 98.3573 | 34.9800 | 512 | 281 | 479 | 8 | 4 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 96.5689 | 98.1481 | 95.0397 | 91.4793 | 477 | 9 | 479 | 25 | 1 | 4.0000 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | homalt | 97.8487 | 96.9512 | 98.7629 | 87.9353 | 477 | 15 | 479 | 6 | 5 | 83.3333 | |