PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60851-60900 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | * | func_cds | * | 99.2118 | 98.8764 | 99.5495 | 41.6557 | 440 | 5 | 442 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | segdup | homalt | 95.0538 | 93.4461 | 96.7177 | 90.8251 | 442 | 31 | 442 | 15 | 11 | 73.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 88.6513 | 85.7977 | 91.7012 | 92.6948 | 441 | 73 | 442 | 40 | 4 | 10.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.5495 | 99.7743 | 99.3258 | 34.4624 | 442 | 1 | 442 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6618 | 99.7743 | 99.5495 | 35.0877 | 442 | 1 | 442 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | segdup | homalt | 95.4644 | 93.4461 | 97.5717 | 90.6347 | 442 | 31 | 442 | 11 | 11 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7743 | 99.7743 | 99.7743 | 34.9486 | 442 | 1 | 442 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | func_cds | * | 99.3248 | 99.1011 | 99.5495 | 36.5714 | 441 | 4 | 442 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | homalt | 96.5066 | 93.4461 | 99.7743 | 93.3702 | 442 | 31 | 442 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.7746 | 91.8919 | 100.0000 | 57.9448 | 442 | 39 | 442 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6618 | 99.7743 | 99.5495 | 35.0877 | 442 | 1 | 442 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.4355 | 91.8750 | 97.1429 | 81.8436 | 441 | 39 | 442 | 13 | 12 | 92.3077 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.9548 | 89.6552 | 96.5066 | 51.9916 | 442 | 51 | 442 | 16 | 3 | 18.7500 | |
| jli-custom | INDEL | * | func_cds | * | 99.4376 | 99.3258 | 99.5495 | 41.4248 | 442 | 3 | 442 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8870 | 99.7743 | 100.0000 | 32.1045 | 442 | 1 | 442 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8870 | 99.7743 | 100.0000 | 31.3665 | 442 | 1 | 442 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 32.3664 | 443 | 0 | 443 | 0 | 0 | ||
| ckim-dragen | INDEL | * | func_cds | * | 98.4444 | 99.5506 | 97.3626 | 49.5006 | 443 | 2 | 443 | 12 | 1 | 8.3333 | |
| ghariani-varprowl | INDEL | * | map_l150_m2_e0 | homalt | 94.8608 | 92.0998 | 97.7925 | 87.5618 | 443 | 38 | 443 | 10 | 3 | 30.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.5771 | 92.0998 | 99.3274 | 67.6812 | 443 | 38 | 443 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8873 | 100.0000 | 99.7748 | 33.9286 | 443 | 0 | 443 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8397 | 95.0820 | 98.6637 | 80.8692 | 464 | 24 | 443 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0002 | 95.9052 | 96.0954 | 70.9880 | 445 | 19 | 443 | 18 | 14 | 77.7778 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | het | 71.4516 | 57.0142 | 95.6803 | 75.8729 | 443 | 334 | 443 | 20 | 12 | 60.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 80.0302 | 67.8322 | 97.5771 | 39.4667 | 194 | 92 | 443 | 11 | 8 | 72.7273 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 92.3995 | 86.2069 | 99.5506 | 43.8131 | 975 | 156 | 443 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | homalt | 75.5926 | 83.8900 | 68.7888 | 82.3948 | 427 | 82 | 443 | 201 | 189 | 94.0299 | |
| bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.0557 | 89.4737 | 96.9365 | 48.0682 | 221 | 26 | 443 | 14 | 14 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 34.7507 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 34.6549 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.4208 | 86.9067 | 66.6165 | 52.9703 | 531 | 80 | 443 | 222 | 213 | 95.9459 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 34.4624 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | * | func_cds | * | 99.4388 | 99.5506 | 99.3274 | 89.6520 | 443 | 2 | 443 | 3 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 63.0990 | 53.8182 | 76.2478 | 70.5076 | 444 | 381 | 443 | 138 | 127 | 92.0290 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 63.0990 | 53.8182 | 76.2478 | 70.5076 | 444 | 381 | 443 | 138 | 127 | 92.0290 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e0 | homalt | 95.3714 | 92.0998 | 98.8839 | 87.1375 | 443 | 38 | 443 | 5 | 3 | 60.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 50.1083 | 46.0897 | 54.8947 | 70.8664 | 442 | 517 | 443 | 364 | 355 | 97.5275 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 33.1832 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1018 | 91.5984 | 98.8839 | 61.3793 | 447 | 41 | 443 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 82.5563 | 97.7477 | 71.4516 | 75.1004 | 434 | 10 | 443 | 177 | 113 | 63.8418 | |
| gduggal-bwaplat | SNP | * | map_l250_m0_e0 | het | 45.3988 | 29.4821 | 98.6667 | 98.9470 | 444 | 1062 | 444 | 6 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 94.4878 | 95.3191 | 93.6709 | 57.5649 | 448 | 22 | 444 | 30 | 29 | 96.6667 | |
| ndellapenna-hhga | INDEL | * | func_cds | * | 99.5516 | 99.7753 | 99.3289 | 89.8846 | 444 | 1 | 444 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | * | * | 10.7850 | 6.2058 | 41.1492 | 71.3717 | 421 | 6363 | 444 | 635 | 373 | 58.7402 | |
| hfeng-pmm1 | INDEL | * | func_cds | * | 99.4386 | 99.3258 | 99.5516 | 42.1530 | 442 | 3 | 444 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | func_cds | * | 99.6618 | 99.3258 | 100.0000 | 42.1121 | 442 | 3 | 444 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | func_cds | * | 99.4386 | 99.3258 | 99.5516 | 44.3196 | 442 | 3 | 444 | 2 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | map_l250_m0_e0 | * | 63.1004 | 58.1699 | 68.9441 | 95.6122 | 445 | 320 | 444 | 200 | 40 | 20.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | homalt | 73.3884 | 58.1913 | 99.3289 | 81.2185 | 444 | 319 | 444 | 3 | 1 | 33.3333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.3593 | 92.2917 | 96.5217 | 82.2462 | 443 | 37 | 444 | 16 | 15 | 93.7500 | |