PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60751-60800 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | ti | map_l250_m0_e0 | homalt | 99.3135 | 99.5413 | 99.0868 | 87.9769 | 434 | 2 | 434 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3197 | 98.6486 | 100.0000 | 73.3087 | 438 | 6 | 434 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3066 | 98.4234 | 98.1900 | 73.3092 | 437 | 7 | 434 | 8 | 4 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7503 | 97.5332 | 97.9684 | 78.6403 | 514 | 13 | 434 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m0_e0 | homalt | 99.4273 | 99.5413 | 99.3135 | 91.3104 | 434 | 2 | 434 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.7350 | 99.3135 | 86.9739 | 48.6097 | 434 | 3 | 434 | 65 | 65 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.7350 | 99.3135 | 86.9739 | 48.2902 | 434 | 3 | 434 | 65 | 65 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002compoundhet | het | 73.4421 | 80.9877 | 67.1827 | 49.1339 | 328 | 77 | 434 | 212 | 201 | 94.8113 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.0938 | 92.8279 | 95.3947 | 79.6156 | 453 | 35 | 435 | 21 | 12 | 57.1429 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7514 | 97.9730 | 99.5423 | 84.3201 | 435 | 9 | 435 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 81.9563 | 92.6437 | 73.4797 | 72.5162 | 403 | 32 | 435 | 157 | 14 | 8.9172 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.8749 | 91.2134 | 86.6534 | 76.1180 | 436 | 42 | 435 | 67 | 12 | 17.9104 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | * | 83.1468 | 77.2177 | 90.0621 | 94.3416 | 383 | 113 | 435 | 48 | 13 | 27.0833 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 47.0936 | 38.2121 | 61.3540 | 79.0423 | 436 | 705 | 435 | 274 | 265 | 96.7153 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 86.9385 | 82.2761 | 92.1610 | 61.6572 | 441 | 95 | 435 | 37 | 30 | 81.0811 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5881 | 92.6230 | 92.5532 | 80.7456 | 452 | 36 | 435 | 35 | 16 | 45.7143 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 84.7268 | 75.8065 | 96.0265 | 93.8384 | 376 | 120 | 435 | 18 | 15 | 83.3333 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 89.1082 | 96.8085 | 82.5427 | 65.8679 | 455 | 15 | 435 | 92 | 82 | 89.1304 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 51.2669 | 34.7444 | 97.7528 | 56.7121 | 435 | 817 | 435 | 10 | 10 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2070 | 98.8739 | 99.5423 | 76.1072 | 439 | 5 | 435 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8636 | 97.9730 | 99.7706 | 84.0117 | 435 | 9 | 435 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3101 | 98.8739 | 97.7528 | 75.8415 | 439 | 5 | 435 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9812 | 98.8739 | 99.0888 | 73.5383 | 439 | 5 | 435 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 92.3729 | 88.2591 | 96.8889 | 46.8085 | 218 | 29 | 436 | 14 | 14 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.1621 | 97.7230 | 87.2000 | 81.7983 | 515 | 12 | 436 | 64 | 51 | 79.6875 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0909 | 98.1982 | 100.0000 | 84.3053 | 436 | 8 | 436 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 81.9533 | 97.9730 | 70.4362 | 86.4433 | 435 | 9 | 436 | 183 | 145 | 79.2350 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2067 | 98.6486 | 99.7712 | 68.9410 | 438 | 6 | 436 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 86.9392 | 99.7712 | 77.0318 | 47.2507 | 436 | 1 | 436 | 130 | 130 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 58.9106 | 52.7711 | 66.6667 | 88.0351 | 438 | 392 | 436 | 218 | 187 | 85.7798 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6466 | 99.0991 | 98.1982 | 76.5823 | 440 | 4 | 436 | 8 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9825 | 99.0991 | 98.8662 | 76.1105 | 440 | 4 | 436 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4340 | 99.0991 | 99.7712 | 75.6817 | 440 | 4 | 436 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0909 | 98.1982 | 100.0000 | 84.6695 | 436 | 8 | 436 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 89.7493 | 83.4297 | 97.1047 | 92.9146 | 433 | 86 | 436 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.6161 | 97.7492 | 82.7324 | 63.1469 | 304 | 7 | 436 | 91 | 90 | 98.9011 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9825 | 99.0991 | 98.8662 | 75.3356 | 440 | 4 | 436 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2077 | 99.0991 | 99.3166 | 75.7056 | 440 | 4 | 436 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4340 | 99.0991 | 99.7712 | 76.2758 | 440 | 4 | 436 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | * | 83.4049 | 79.9263 | 87.2000 | 93.3581 | 434 | 109 | 436 | 64 | 4 | 6.2500 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 52.7646 | 70.1389 | 42.2890 | 66.9445 | 202 | 86 | 436 | 595 | 310 | 52.1008 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.6652 | 92.4180 | 58.5235 | 76.3191 | 451 | 37 | 436 | 309 | 284 | 91.9094 | |
| gduggal-bwaplat | SNP | ti | map_l250_m0_e0 | * | 48.2606 | 31.8978 | 99.0930 | 98.5682 | 437 | 933 | 437 | 4 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.8440 | 62.9842 | 86.3636 | 38.2927 | 439 | 258 | 437 | 69 | 65 | 94.2029 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.9006 | 95.8874 | 100.0000 | 43.1730 | 443 | 19 | 437 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7738 | 99.5485 | 100.0000 | 26.8007 | 441 | 2 | 437 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 84.9655 | 76.8482 | 95.0000 | 94.5186 | 395 | 119 | 437 | 23 | 19 | 82.6087 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 78.1967 | 65.8436 | 96.2555 | 92.8784 | 320 | 166 | 437 | 17 | 9 | 52.9412 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7457 | 97.5225 | 100.0000 | 84.7096 | 433 | 11 | 437 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | het | 83.5667 | 80.4979 | 86.8787 | 94.5219 | 388 | 94 | 437 | 66 | 17 | 25.7576 | |