PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59951-60000 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8242 | 359 | 0 | 359 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.4986 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5295 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5493 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | segdup | homalt | 99.8609 | 100.0000 | 99.7222 | 94.4853 | 359 | 0 | 359 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4702 | 93.2292 | 95.7447 | 81.9664 | 358 | 26 | 360 | 16 | 12 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4748 | 95.8333 | 99.1736 | 75.2556 | 161 | 7 | 360 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.1736 | 98.9011 | 99.4475 | 86.3961 | 360 | 4 | 360 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.2157 | 50.9066 | 98.9011 | 51.7881 | 365 | 352 | 360 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 69.8222 | 55.2833 | 94.7368 | 83.6277 | 361 | 292 | 360 | 20 | 16 | 80.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.1736 | 98.9011 | 99.4475 | 87.9894 | 360 | 4 | 360 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7230 | 99.7230 | 99.7230 | 60.8884 | 360 | 1 | 360 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 90.8850 | 85.2657 | 97.2973 | 66.0239 | 353 | 61 | 360 | 10 | 10 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5851 | 99.7230 | 99.4475 | 61.2420 | 360 | 1 | 360 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.6923 | 95.5844 | 97.8261 | 79.5669 | 368 | 17 | 360 | 8 | 7 | 87.5000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5851 | 99.7230 | 99.4475 | 62.7955 | 360 | 1 | 360 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5851 | 99.7230 | 99.4475 | 61.4072 | 360 | 1 | 360 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4490 | 99.1758 | 99.7238 | 84.2814 | 361 | 3 | 361 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0398 | 99.1758 | 98.9041 | 85.4408 | 361 | 3 | 361 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 26.6884 | 15.5852 | 92.8021 | 65.3298 | 257 | 1392 | 361 | 28 | 27 | 96.4286 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 77.7331 | 64.7163 | 97.3046 | 78.9683 | 365 | 199 | 361 | 10 | 6 | 60.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 87.7770 | 94.3694 | 82.0455 | 74.5958 | 419 | 25 | 361 | 79 | 28 | 35.4430 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 62.0275 | 82.7982 | 49.5879 | 79.0744 | 361 | 75 | 361 | 367 | 274 | 74.6594 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.9592 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.3122 | 99.1758 | 99.4490 | 86.4855 | 361 | 3 | 361 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5862 | 100.0000 | 99.1758 | 63.0457 | 361 | 0 | 361 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 63.1098 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.3122 | 99.1758 | 99.4490 | 86.4552 | 361 | 3 | 361 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.9592 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.3122 | 99.1758 | 99.4490 | 86.4855 | 361 | 3 | 361 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8617 | 100.0000 | 99.7238 | 62.2523 | 361 | 0 | 361 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.9592 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 49.2182 | 39.3273 | 65.7559 | 77.6192 | 304 | 469 | 361 | 188 | 52 | 27.6596 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.9969 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | * | 83.0230 | 95.8478 | 73.2252 | 92.0420 | 277 | 12 | 361 | 132 | 21 | 15.9091 | |
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | homalt | 82.5287 | 72.0779 | 96.5241 | 92.1114 | 333 | 129 | 361 | 13 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.3541 | 96.3636 | 98.3651 | 75.9186 | 371 | 14 | 361 | 6 | 5 | 83.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.3122 | 99.1758 | 99.4490 | 85.1837 | 361 | 3 | 361 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.8074 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4498 | 99.4505 | 99.4490 | 84.0999 | 362 | 2 | 361 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.6407 | 94.7230 | 98.6376 | 55.9424 | 359 | 20 | 362 | 5 | 5 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 72.5970 | 78.6466 | 67.4115 | 73.7023 | 523 | 142 | 362 | 175 | 146 | 83.4286 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.4178 | 78.4483 | 86.8106 | 63.9896 | 364 | 100 | 362 | 55 | 35 | 63.6364 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.6102 | 66.6667 | 95.7672 | 95.4210 | 2 | 1 | 362 | 16 | 4 | 25.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.4064 | 90.9774 | 82.2727 | 51.2195 | 363 | 36 | 362 | 78 | 78 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 71.8588 | 77.9279 | 66.6667 | 60.8225 | 346 | 98 | 362 | 181 | 179 | 98.8950 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4505 | 99.4505 | 99.4505 | 84.6219 | 362 | 2 | 362 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.5873 | 99.4505 | 99.7245 | 83.3867 | 362 | 2 | 362 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.3789 | 96.2567 | 94.5170 | 61.8146 | 360 | 14 | 362 | 21 | 21 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 52.9379 | 91.7293 | 37.2045 | 59.0488 | 366 | 33 | 362 | 611 | 566 | 92.6350 | |