PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59901-59950 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 73.7279 | 98.8858 | 58.7748 | 45.3888 | 355 | 4 | 355 | 249 | 247 | 99.1968 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.3179 | 98.6450 | 100.0000 | 77.5032 | 364 | 5 | 355 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.6878 | 359 | 0 | 355 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | * | 17.4062 | 15.1645 | 20.4258 | 36.2202 | 355 | 1986 | 355 | 1383 | 1372 | 99.2046 | |
| gduggal-bwafb | INDEL | D1_5 | segdup | homalt | 99.7207 | 99.4429 | 100.0000 | 94.9012 | 357 | 2 | 356 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.1659 | 98.8920 | 99.4413 | 56.2882 | 357 | 4 | 356 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7283 | 99.4580 | 100.0000 | 77.2087 | 367 | 2 | 356 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.1694 | 92.2078 | 96.2162 | 75.6258 | 355 | 30 | 356 | 14 | 2 | 14.2857 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.6879 | 359 | 0 | 356 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5758 | 97.4576 | 99.7199 | 68.4629 | 345 | 9 | 356 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.7544 | 98.0769 | 99.4413 | 85.9828 | 357 | 7 | 356 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 89.7947 | 82.2323 | 98.8889 | 27.1255 | 361 | 78 | 356 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.3363 | 98.8920 | 81.4645 | 58.0614 | 357 | 4 | 356 | 81 | 1 | 1.2346 | |
| qzeng-custom | INDEL | D1_5 | segdup | homalt | 99.3034 | 99.4429 | 99.1643 | 93.1723 | 357 | 2 | 356 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.5772 | 91.4508 | 67.3585 | 91.9490 | 353 | 33 | 357 | 173 | 20 | 11.5607 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.7796 | 27.0106 | 45.0758 | 47.5149 | 356 | 962 | 357 | 435 | 415 | 95.4023 | |
| gduggal-snapfb | INDEL | D1_5 | segdup | homalt | 98.6157 | 98.8858 | 98.3471 | 95.1952 | 355 | 4 | 357 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | homalt | 79.1574 | 66.1111 | 98.6188 | 77.9671 | 357 | 183 | 357 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | segdup | homalt | 99.7207 | 99.4429 | 100.0000 | 94.4210 | 357 | 2 | 357 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.2283 | 97.0430 | 99.4429 | 83.5246 | 361 | 11 | 357 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e0 | het | 31.0570 | 18.4021 | 99.4429 | 98.7043 | 357 | 1583 | 357 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | segdup | homalt | 99.5816 | 99.4429 | 99.7207 | 94.5193 | 357 | 2 | 357 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.3046 | 98.8920 | 99.7207 | 63.3572 | 357 | 4 | 357 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.9013 | 72.7088 | 99.1667 | 31.9471 | 357 | 134 | 357 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_siren | * | 73.9453 | 70.3340 | 77.9476 | 83.7819 | 358 | 151 | 357 | 101 | 93 | 92.0792 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.8950 | 98.3516 | 99.4444 | 86.2385 | 358 | 6 | 358 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | homalt | 99.8605 | 99.7214 | 100.0000 | 94.5201 | 358 | 1 | 358 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 73.9449 | 73.7705 | 74.1201 | 54.7329 | 360 | 128 | 358 | 125 | 125 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_siren | * | 81.5490 | 70.3340 | 97.0190 | 92.0577 | 358 | 151 | 358 | 11 | 3 | 27.2727 | |
| jlack-gatk | INDEL | D1_5 | segdup | homalt | 99.5828 | 99.7214 | 99.4444 | 94.1766 | 358 | 1 | 358 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.1959 | 89.4737 | 99.4444 | 63.3401 | 340 | 40 | 358 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.3065 | 99.1690 | 99.4444 | 61.2487 | 358 | 3 | 358 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | homalt | 99.5828 | 99.7214 | 99.4444 | 94.2939 | 358 | 1 | 358 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.3490 | 98.0769 | 98.6226 | 89.6286 | 357 | 7 | 358 | 5 | 3 | 60.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 26.5124 | 15.4269 | 94.2105 | 53.3742 | 365 | 2001 | 358 | 22 | 17 | 77.2727 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0086 | 86.2259 | 98.6226 | 46.2222 | 313 | 50 | 358 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | * | func_cds | * | 81.4334 | 80.2247 | 82.6790 | 38.5816 | 357 | 88 | 358 | 75 | 54 | 72.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.8950 | 98.3516 | 99.4444 | 84.6743 | 358 | 6 | 358 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.1708 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.6120 | 90.0000 | 99.7222 | 61.7428 | 342 | 38 | 359 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | homalt | 74.9478 | 66.4815 | 85.8852 | 77.4663 | 359 | 181 | 359 | 59 | 57 | 96.6102 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.9766 | 17.5155 | 20.7036 | 55.4928 | 368 | 1733 | 359 | 1375 | 1359 | 98.8364 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5203 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | segdup | homalt | 99.8609 | 100.0000 | 99.7222 | 94.3074 | 359 | 0 | 359 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5665 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5493 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9603 | 359 | 0 | 359 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5839 | 99.4460 | 99.7222 | 61.9048 | 359 | 2 | 359 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 359 | 0 | 359 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.1713 | 98.6264 | 99.7222 | 85.0436 | 359 | 5 | 359 | 1 | 1 | 100.0000 | |