PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59851-59900 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 68.7152 | 52.6555 | 98.8701 | 55.1331 | 347 | 312 | 350 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 68.7152 | 52.6555 | 98.8701 | 55.1331 | 347 | 312 | 350 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | homalt | 79.0960 | 65.9134 | 98.8701 | 77.8750 | 350 | 181 | 350 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.7128 | 96.9359 | 81.7757 | 44.7028 | 348 | 11 | 350 | 78 | 77 | 98.7179 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002compoundhet | * | 17.0370 | 14.9082 | 19.8751 | 36.5405 | 349 | 1992 | 350 | 1411 | 1404 | 99.5039 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.0804 | 87.4552 | 97.2222 | 61.8644 | 244 | 35 | 350 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0079 | 98.5876 | 99.4318 | 70.3953 | 349 | 5 | 350 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 96.3154 | 93.3884 | 99.4318 | 53.2537 | 339 | 24 | 350 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m1_e0 | homalt | 48.6787 | 40.8879 | 60.1375 | 71.4985 | 350 | 506 | 350 | 232 | 216 | 93.1034 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 88.9515 | 83.7321 | 94.8649 | 49.2455 | 350 | 68 | 351 | 19 | 19 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.0914 | 93.1398 | 75.0000 | 56.9061 | 353 | 26 | 351 | 117 | 113 | 96.5812 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.2737 | 91.9271 | 98.8732 | 77.2144 | 353 | 31 | 351 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.0096 | 96.8927 | 99.1525 | 64.3505 | 343 | 11 | 351 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.4765 | 97.7716 | 74.3644 | 48.9730 | 351 | 8 | 351 | 121 | 119 | 98.3471 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | het | 32.7572 | 85.1852 | 20.2773 | 36.0547 | 345 | 60 | 351 | 1380 | 1369 | 99.2029 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 24.4790 | 14.1603 | 90.2314 | 68.8301 | 258 | 1564 | 351 | 38 | 31 | 81.5789 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 69.6060 | 94.2197 | 55.1887 | 74.6108 | 326 | 20 | 351 | 285 | 24 | 8.4211 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 33.0811 | 28.3279 | 39.7508 | 61.8410 | 349 | 883 | 351 | 532 | 502 | 94.3609 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 63.3979 | 87.0324 | 49.8584 | 69.2241 | 349 | 52 | 352 | 354 | 346 | 97.7401 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.7305 | 90.6250 | 86.9136 | 84.8258 | 348 | 36 | 352 | 53 | 21 | 39.6226 | |
| mlin-fermikit | INDEL | D1_5 | segdup | homalt | 98.3264 | 98.3287 | 98.3240 | 93.5215 | 353 | 6 | 352 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | homalt | 74.8140 | 66.2900 | 85.8537 | 77.2601 | 352 | 179 | 352 | 58 | 56 | 96.5517 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7409 | 97.7839 | 99.7167 | 56.1491 | 353 | 8 | 352 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.8667 | 90.7216 | 97.2376 | 69.9834 | 352 | 36 | 352 | 10 | 9 | 90.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4338 | 99.1525 | 99.7167 | 70.3361 | 351 | 3 | 352 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.2535 | 93.7662 | 98.8764 | 76.3769 | 361 | 24 | 352 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.6549 | 94.0260 | 99.4350 | 76.0811 | 362 | 23 | 352 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 78.7591 | 65.2015 | 99.4350 | 82.5616 | 356 | 190 | 352 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4338 | 99.1525 | 99.7167 | 70.1606 | 351 | 3 | 352 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.2738 | 67.8208 | 98.3287 | 28.7698 | 333 | 158 | 353 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 79.7448 | 96.1003 | 68.1467 | 47.3577 | 345 | 14 | 353 | 165 | 141 | 85.4545 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.2428 | 98.3287 | 69.2157 | 47.0954 | 353 | 6 | 353 | 157 | 156 | 99.3631 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.1628 | 98.3287 | 75.1064 | 48.2379 | 353 | 6 | 353 | 117 | 116 | 99.1453 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.2977 | 92.4479 | 98.3287 | 77.4356 | 355 | 29 | 353 | 6 | 1 | 16.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 88.3380 | 89.7756 | 86.9458 | 76.1737 | 360 | 41 | 353 | 53 | 41 | 77.3585 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.9436 | 97.8320 | 98.0556 | 80.5300 | 361 | 8 | 353 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 48.9473 | 54.4444 | 44.4584 | 86.7689 | 343 | 287 | 353 | 441 | 11 | 2.4943 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4550 | 98.9160 | 100.0000 | 75.9184 | 365 | 4 | 354 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5072 | 98.6072 | 75.4797 | 48.5746 | 354 | 5 | 354 | 115 | 114 | 99.1304 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5072 | 98.6072 | 75.4797 | 48.5181 | 354 | 5 | 354 | 115 | 114 | 99.1304 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 88.8331 | 79.9097 | 100.0000 | 43.6306 | 354 | 89 | 354 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.0233 | 98.3380 | 99.7183 | 57.9882 | 355 | 6 | 354 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.4041 | 98.6072 | 75.3191 | 48.5214 | 354 | 5 | 354 | 116 | 115 | 99.1379 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5336 | 94.5455 | 98.6072 | 76.2252 | 364 | 21 | 354 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.8252 | 67.8208 | 100.0000 | 29.8419 | 333 | 158 | 355 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.7513 | 97.8022 | 99.7191 | 80.2770 | 356 | 8 | 355 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | segdup | homalt | 99.8605 | 99.7214 | 100.0000 | 92.9966 | 358 | 1 | 355 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 91.4566 | 84.8624 | 99.1620 | 69.5837 | 370 | 66 | 355 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5890 | 98.0226 | 99.1620 | 62.9783 | 347 | 7 | 355 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002complexvar | hetalt | 85.1780 | 74.4939 | 99.4398 | 52.4000 | 184 | 63 | 355 | 2 | 2 | 100.0000 | |