PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59651-59700 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2679 | 99.4135 | 99.1228 | 84.7048 | 339 | 2 | 339 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.6468 | 94.0299 | 99.4135 | 66.8932 | 315 | 20 | 339 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4903 | 97.8659 | 99.1228 | 38.1555 | 321 | 7 | 339 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.6912 | 99.1254 | 98.2609 | 89.6084 | 340 | 3 | 339 | 6 | 3 | 50.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | het | 89.3281 | 98.2609 | 81.8841 | 92.0000 | 339 | 6 | 339 | 75 | 9 | 12.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 85.4907 | 340 | 1 | 340 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0279 | 99.5098 | 98.5507 | 88.2373 | 203 | 1 | 340 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 76.2512 | 62.2951 | 98.2659 | 87.5405 | 342 | 207 | 340 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.6971 | 97.7077 | 99.7067 | 78.8724 | 341 | 8 | 340 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.2479 | 94.7075 | 55.8292 | 51.1236 | 340 | 19 | 340 | 269 | 269 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.9799 | 94.9254 | 99.1254 | 69.6996 | 318 | 17 | 340 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 89.4716 | 98.2609 | 82.1256 | 91.8808 | 339 | 6 | 340 | 74 | 2 | 2.7027 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.9811 | 99.1254 | 98.8372 | 84.8791 | 340 | 3 | 340 | 4 | 2 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.2687 | 95.4802 | 99.1254 | 71.1036 | 338 | 16 | 340 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.7283 | 98.2659 | 95.2381 | 69.3299 | 340 | 6 | 340 | 17 | 13 | 76.4706 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5585 | 98.2609 | 96.8661 | 90.0256 | 339 | 6 | 340 | 11 | 1 | 9.0909 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.3541 | 87.9896 | 99.4152 | 75.0910 | 337 | 46 | 340 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 80.0047 | 81.9376 | 78.1609 | 70.0413 | 499 | 110 | 340 | 95 | 57 | 60.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | homalt | 78.8863 | 65.6371 | 98.8372 | 75.6719 | 340 | 178 | 340 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 84.7216 | 340 | 1 | 340 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.4984 | 89.8072 | 99.7067 | 47.0497 | 326 | 37 | 340 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5608 | 99.7067 | 99.4152 | 85.0850 | 340 | 1 | 340 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.9811 | 99.1254 | 98.8372 | 85.8553 | 340 | 3 | 340 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9819 | 99.4169 | 98.5507 | 55.3109 | 341 | 2 | 340 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 85.0480 | 340 | 1 | 340 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 28.4651 | 25.7208 | 31.8650 | 61.9879 | 339 | 979 | 340 | 727 | 723 | 99.4498 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.2734 | 78.1321 | 98.8372 | 30.2231 | 343 | 96 | 340 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5646 | 99.1329 | 100.0000 | 74.3783 | 343 | 3 | 340 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8540 | 99.7085 | 100.0000 | 50.1462 | 342 | 1 | 341 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e0 | homalt | 96.1918 | 93.6813 | 98.8406 | 82.0686 | 341 | 23 | 341 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 83.2522 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.9543 | 90.6336 | 99.7076 | 43.5644 | 329 | 34 | 341 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 94.0671 | 98.5507 | 89.9736 | 92.9238 | 340 | 5 | 341 | 38 | 1 | 2.6316 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.2722 | 99.4169 | 99.1279 | 84.8990 | 341 | 2 | 341 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5620 | 99.4169 | 99.7076 | 57.3034 | 341 | 2 | 341 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.7132 | 76.4249 | 60.7843 | 87.7538 | 295 | 91 | 341 | 220 | 80 | 36.3636 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 84.4625 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 84.2419 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 86.3345 | 95.2646 | 78.9352 | 39.3258 | 342 | 17 | 341 | 91 | 89 | 97.8022 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 78.9725 | 65.3768 | 99.7076 | 29.3388 | 321 | 170 | 341 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6348 | 93.9058 | 97.4286 | 67.0123 | 339 | 22 | 341 | 9 | 7 | 77.7778 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | homalt | 74.4541 | 65.8301 | 85.6784 | 74.7141 | 341 | 177 | 341 | 57 | 55 | 96.4912 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 49.6307 | 343 | 0 | 341 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7101 | 99.4220 | 100.0000 | 73.1707 | 344 | 2 | 341 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.2722 | 99.4169 | 99.1279 | 85.2297 | 341 | 2 | 341 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | homalt | 95.6522 | 93.6813 | 97.7077 | 82.5500 | 341 | 23 | 341 | 8 | 1 | 12.5000 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.9225 | 80.8559 | 91.6667 | 87.7792 | 359 | 85 | 341 | 31 | 12 | 38.7097 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | het | 80.0469 | 67.1260 | 99.1279 | 94.7816 | 341 | 167 | 341 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.2949 | 45.8221 | 83.9901 | 84.3906 | 340 | 402 | 341 | 65 | 1 | 1.5385 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 97.6160 | 95.8791 | 99.4169 | 80.7412 | 349 | 15 | 341 | 2 | 2 | 100.0000 | |