PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59551-59600 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6676 | 96.8208 | 98.5294 | 69.4245 | 335 | 11 | 335 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 87.4862 | 79.2271 | 97.6676 | 67.3333 | 328 | 86 | 335 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.2286 | 59.3301 | 57.1672 | 32.0973 | 248 | 170 | 335 | 251 | 223 | 88.8446 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 93.3148 | 88.6243 | 46.6855 | 335 | 24 | 335 | 43 | 41 | 95.3488 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.4245 | 94.0678 | 96.8208 | 67.3893 | 333 | 21 | 335 | 11 | 8 | 72.7273 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.1750 | 93.3148 | 87.2396 | 48.1081 | 335 | 24 | 335 | 49 | 47 | 95.9184 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.3885 | 93.5484 | 99.4065 | 59.1515 | 319 | 22 | 335 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.4235 | 77.7551 | 49.4100 | 70.5217 | 381 | 109 | 335 | 343 | 340 | 99.1254 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 77.8607 | 63.7475 | 100.0000 | 28.1116 | 313 | 178 | 335 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3847 | 96.8208 | 100.0000 | 66.2978 | 335 | 11 | 335 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | het | 83.4371 | 98.2405 | 72.5108 | 94.3348 | 335 | 6 | 335 | 127 | 22 | 17.3228 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | het | 96.8208 | 97.1014 | 96.5418 | 87.1908 | 335 | 10 | 335 | 12 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.1073 | 98.8338 | 97.3913 | 53.1886 | 339 | 4 | 336 | 9 | 3 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5327 | 97.1098 | 97.9592 | 67.3333 | 336 | 10 | 336 | 7 | 1 | 14.2857 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.8651 | 96.6463 | 99.1150 | 36.8715 | 317 | 11 | 336 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 51.6345 | 52.3810 | 50.9091 | 64.2857 | 330 | 300 | 336 | 324 | 243 | 75.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 57.4519 | 55.8442 | 59.1549 | 62.6561 | 215 | 170 | 336 | 232 | 51 | 21.9828 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5284 | 97.1014 | 97.9592 | 87.5680 | 335 | 10 | 336 | 7 | 1 | 14.2857 | |
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | het | 96.5459 | 97.9472 | 95.1841 | 92.9709 | 334 | 7 | 336 | 17 | 1 | 5.8824 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | het | 97.3854 | 97.9472 | 96.8300 | 91.4173 | 334 | 7 | 336 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8166 | 97.1098 | 98.5337 | 67.5856 | 336 | 10 | 336 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6744 | 97.1098 | 98.2456 | 68.8808 | 336 | 10 | 336 | 6 | 3 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.8253 | 98.8270 | 98.8235 | 83.5590 | 337 | 4 | 336 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 95.4545 | 97.3913 | 93.5933 | 87.7139 | 336 | 9 | 336 | 23 | 2 | 8.6957 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.0064 | 337 | 9 | 337 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.1691 | 88.9807 | 100.0000 | 46.6772 | 323 | 40 | 337 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m0_e0 | het | 92.1979 | 98.2405 | 86.8557 | 95.3544 | 335 | 6 | 337 | 51 | 1 | 1.9608 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.7509 | 337 | 9 | 337 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0377 | 88.9807 | 99.7041 | 43.6667 | 323 | 40 | 337 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | het | 48.1704 | 38.4615 | 64.4359 | 89.9093 | 305 | 488 | 337 | 186 | 31 | 16.6667 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 95.8748 | 92.5824 | 99.4100 | 87.0065 | 337 | 27 | 337 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.7378 | 92.8358 | 98.8270 | 70.0351 | 311 | 24 | 337 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.1077 | 97.3988 | 98.8270 | 68.8300 | 337 | 9 | 337 | 4 | 1 | 25.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1780 | 97.2561 | 99.1176 | 38.1818 | 319 | 9 | 337 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.4555 | 96.9512 | 97.9651 | 38.5714 | 318 | 10 | 337 | 7 | 5 | 71.4286 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 81.4279 | 69.0962 | 99.1176 | 84.0450 | 237 | 106 | 337 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.2276 | 87.3057 | 93.3518 | 89.1559 | 337 | 49 | 337 | 24 | 15 | 62.5000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1211 | 98.8338 | 99.4100 | 80.8041 | 339 | 4 | 337 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.3942 | 97.3988 | 99.4100 | 77.7413 | 337 | 9 | 337 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.3969 | 337 | 9 | 337 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5398 | 97.6812 | 97.3988 | 87.9694 | 337 | 8 | 337 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0377 | 88.9807 | 99.7041 | 43.6667 | 323 | 40 | 337 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 73.1236 | 61.8658 | 89.3899 | 45.9110 | 378 | 233 | 337 | 40 | 35 | 87.5000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 30.5547 | 21.2500 | 54.3548 | 46.8723 | 102 | 378 | 337 | 283 | 282 | 99.6466 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0179 | 99.5025 | 98.5380 | 88.0795 | 200 | 1 | 337 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 78.6924 | 66.6667 | 96.0114 | 97.4973 | 2 | 1 | 337 | 14 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.9633 | 96.8354 | 99.1176 | 83.2016 | 306 | 10 | 337 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4520 | 96.9512 | 100.0000 | 38.2784 | 318 | 10 | 337 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6836 | 99.1202 | 98.2507 | 89.4526 | 338 | 3 | 337 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | homalt | 90.9566 | 86.6295 | 95.7386 | 91.9173 | 311 | 48 | 337 | 15 | 15 | 100.0000 | |