PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
5901-5950 / 86044 show all
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.4818
0.0000
0.0000
398056000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.5273
0.0000
0.0000
366791000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.4772
0.0000
0.0000
398134000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.4843
0.0000
0.0000
459246000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.6099
0.0000
0.0000
426844000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
0491000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.4866
0.0000
0.0000
2409000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
01000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
01000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.4689
0.0000
0.0000
71486000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.1538
0.0000
0.0000
1649000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.4329
0.0000
0.0000
2460000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
049000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
013000
jpowers-varprowlINDELD1_5map_l100_m0_e0hetalt
0.0000
0.0000
0.0000
014000
jpowers-varprowlINDELD1_5map_l100_m1_e0hetalt
0.0000
0.0000
0.0000
047000
jpowers-varprowlINDELD1_5map_l100_m2_e0hetalt
0.0000
0.0000
0.0000
048000
jpowers-varprowlINDELD1_5map_l100_m2_e1hetalt
0.0000
1.9608
0.0000
0.0000
150000
jpowers-varprowlINDELD1_5map_l125_m0_e0hetalt
0.0000
0.0000
0.0000
03000
jpowers-varprowlINDELD1_5map_l125_m1_e0hetalt
0.0000
0.0000
0.0000
013000
jpowers-varprowlINDELD1_5map_l125_m2_e0hetalt
0.0000
0.0000
0.0000
015000
jpowers-varprowlINDELD1_5map_l125_m2_e1hetalt
0.0000
0.0000
0.0000
015000
jpowers-varprowlINDELD1_5map_l150_m0_e0hetalt
0.0000
0.0000
0.0000
02000
jpowers-varprowlINDELD1_5map_l150_m1_e0hetalt
0.0000
0.0000
0.0000
07000
jpowers-varprowlINDELD1_5map_l150_m2_e0hetalt
0.0000
0.0000
0.0000
07000
jpowers-varprowlINDELD1_5map_l150_m2_e1hetalt
0.0000
0.0000
0.0000
08000
jpowers-varprowlINDELD1_5map_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5map_l250_m1_e0hetalt
0.0000
0.0000
0.0000
03000
jpowers-varprowlINDELD1_5map_l250_m2_e0hetalt
0.0000
0.0000
0.0000
03000
jpowers-varprowlINDELD1_5map_l250_m2_e1hetalt
0.0000
0.0000
0.0000
03000
jpowers-varprowlINDELD1_5map_sirenhetalt
0.0000
0.0000
0.0000
084000
jpowers-varprowlINDELD1_5segduphetalt
0.0000
1.9231
0.0000
0.0000
151000
jpowers-varprowlINDELD1_5segdupwithalthetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5tech_badpromotershetalt
0.0000
0.0000
0.0000
02000
jpowers-varprowlINDELD6_15*hetalt
0.0000
0.3793
0.0000
0.0000
318143000
jpowers-varprowlINDELD6_15HG002complexvarhetalt
0.0000
1.5795
0.0000
0.0000
16997000
jpowers-varprowlINDELD6_15HG002compoundhethetalt
0.0000
0.3803
0.0000
0.0000
318120000
jpowers-varprowlINDELD6_15decoy*
0.0000
0.0000
99.9240
01011
100.0000