PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59301-59350 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | het | 87.9923 | 98.4375 | 79.5511 | 91.6753 | 189 | 3 | 319 | 82 | 26 | 31.7073 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2177 | 95.4861 | 96.9605 | 77.6949 | 275 | 13 | 319 | 10 | 8 | 80.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 16.8236 | 10.3093 | 45.7020 | 62.4933 | 360 | 3132 | 319 | 379 | 351 | 92.6121 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6165 | 96.0123 | 95.2239 | 86.1513 | 313 | 13 | 319 | 16 | 3 | 18.7500 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | * | 96.5204 | 96.3746 | 96.6667 | 95.5291 | 319 | 12 | 319 | 11 | 4 | 36.3636 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | het | 98.2965 | 97.2393 | 99.3769 | 85.1320 | 317 | 9 | 319 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | * | 96.3746 | 95.7958 | 96.9605 | 99.6645 | 319 | 14 | 319 | 10 | 5 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | het | 97.4050 | 97.5460 | 97.2644 | 82.8646 | 318 | 8 | 320 | 9 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.6418 | 84.5730 | 100.0000 | 45.2055 | 307 | 56 | 320 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 64.3216 | 84.4327 | 51.9481 | 54.2348 | 320 | 59 | 320 | 296 | 261 | 88.1757 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 57.3545 | 40.9277 | 95.8084 | 61.2079 | 300 | 433 | 320 | 14 | 12 | 85.7143 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 28.9593 | 17.5631 | 82.4742 | 66.3778 | 320 | 1502 | 320 | 68 | 51 | 75.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 74.2459 | 71.4286 | 77.2947 | 60.6089 | 435 | 174 | 320 | 94 | 92 | 97.8723 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2826 | 99.4949 | 99.0712 | 87.5674 | 197 | 1 | 320 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | het | 93.0233 | 93.8416 | 92.2190 | 93.9442 | 320 | 21 | 320 | 27 | 18 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.2624 | 91.6185 | 90.9091 | 64.6231 | 317 | 29 | 320 | 32 | 16 | 50.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | * | 96.3855 | 96.0961 | 96.6767 | 99.5385 | 320 | 13 | 320 | 11 | 3 | 27.2727 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | * | 96.0961 | 96.0961 | 96.0961 | 96.5720 | 320 | 13 | 320 | 13 | 3 | 23.0769 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3846 | 99.0826 | 99.6885 | 78.7135 | 324 | 3 | 320 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | * | 96.3855 | 96.0961 | 96.6767 | 99.5648 | 320 | 13 | 320 | 11 | 3 | 27.2727 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 93.9867 | 89.1496 | 99.3789 | 58.6118 | 304 | 37 | 320 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | * | map_l250_m2_e0 | * | 95.3800 | 96.6767 | 94.1176 | 96.2801 | 320 | 11 | 320 | 20 | 4 | 20.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.7110 | 91.4414 | 96.0961 | 45.1400 | 203 | 19 | 320 | 13 | 11 | 84.6154 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | * | 93.5413 | 95.4683 | 91.6905 | 95.6635 | 316 | 15 | 320 | 29 | 3 | 10.3448 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 62.0432 | 53.7002 | 73.4554 | 68.7187 | 283 | 244 | 321 | 116 | 109 | 93.9655 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 54.5815 | 78.4416 | 41.8514 | 67.3617 | 302 | 83 | 321 | 446 | 114 | 25.5605 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.9649 | 87.8049 | 98.7692 | 75.2098 | 324 | 45 | 321 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | het | 79.2593 | 66.0494 | 99.0741 | 94.2776 | 321 | 165 | 321 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | het | 93.5860 | 98.4663 | 89.1667 | 91.2643 | 321 | 5 | 321 | 39 | 10 | 25.6410 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.2310 | 99.3884 | 99.0741 | 82.8662 | 325 | 2 | 321 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | * | map_l250_m2_e0 | * | 90.6780 | 96.9789 | 85.1459 | 97.0399 | 321 | 10 | 321 | 56 | 4 | 7.1429 | |
| jli-custom | INDEL | * | map_l250_m2_e1 | * | 96.5414 | 96.3964 | 96.6867 | 95.6252 | 321 | 12 | 321 | 11 | 4 | 36.3636 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.8033 | 84.8485 | 100.0000 | 47.2906 | 308 | 55 | 321 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m0_e0 | het | 98.6161 | 98.1595 | 99.0769 | 84.9885 | 320 | 6 | 322 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 94.1469 | 98.1595 | 90.4494 | 90.9645 | 320 | 6 | 322 | 34 | 1 | 2.9412 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 98.4653 | 98.1595 | 98.7730 | 87.5096 | 320 | 6 | 322 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.6139 | 90.0293 | 99.6904 | 56.8182 | 307 | 34 | 322 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002compoundhet | homalt | 90.7042 | 97.8723 | 84.5144 | 83.9037 | 322 | 7 | 322 | 59 | 58 | 98.3051 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | * | 93.5790 | 95.4955 | 91.7379 | 95.7583 | 318 | 15 | 322 | 29 | 3 | 10.3448 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7749 | 98.7768 | 98.7730 | 82.1174 | 323 | 4 | 322 | 4 | 3 | 75.0000 | |
| ckim-gatk | INDEL | * | map_l250_m2_e0 | * | 92.5287 | 97.2810 | 88.2192 | 97.2498 | 322 | 9 | 322 | 43 | 4 | 9.3023 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002compoundhet | homalt | 91.5810 | 93.0091 | 90.1961 | 73.3184 | 306 | 23 | 322 | 35 | 34 | 97.1429 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.1400 | 15.6592 | 18.9300 | 50.8097 | 329 | 1772 | 322 | 1379 | 1373 | 99.5649 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 98.9224 | 98.4663 | 99.3827 | 84.2412 | 321 | 5 | 322 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 95.9708 | 98.1595 | 93.8776 | 91.6586 | 320 | 6 | 322 | 21 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 59.5731 | 42.4788 | 99.6904 | 42.1147 | 401 | 543 | 322 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | homalt | 68.8793 | 98.4802 | 52.9605 | 78.9109 | 324 | 5 | 322 | 286 | 246 | 86.0140 | |
| astatham-gatk | INDEL | * | map_l250_m2_e1 | * | 95.4074 | 96.6967 | 94.1520 | 96.3590 | 322 | 11 | 322 | 20 | 4 | 20.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | het | 98.1651 | 98.1595 | 98.1707 | 86.4351 | 320 | 6 | 322 | 6 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 95.6909 | 92.2636 | 99.3827 | 86.3464 | 322 | 27 | 322 | 2 | 1 | 50.0000 | |