PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58801-58850 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | map_siren | * | 95.2066 | 94.4262 | 96.0000 | 86.3014 | 288 | 17 | 288 | 12 | 5 | 41.6667 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | het | 94.7249 | 92.8803 | 96.6443 | 94.6326 | 287 | 22 | 288 | 10 | 1 | 10.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | * | 97.7917 | 99.3080 | 96.3211 | 91.7060 | 287 | 2 | 288 | 11 | 1 | 9.0909 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | het | 96.1457 | 95.6522 | 96.6443 | 87.6707 | 286 | 13 | 288 | 10 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 47.7941 | 75.5844 | 34.9456 | 64.9725 | 291 | 94 | 289 | 538 | 478 | 88.8476 | |
| eyeh-varpipe | SNP | tv | map_siren | hetalt | 98.7001 | 98.7654 | 98.6348 | 72.7948 | 80 | 1 | 289 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 37.1836 | 23.0932 | 95.3795 | 55.7018 | 218 | 726 | 289 | 14 | 14 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | * | 80.7714 | 71.4286 | 92.9260 | 89.3893 | 5 | 2 | 289 | 22 | 4 | 18.1818 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.0506 | 91.1392 | 99.3127 | 70.7538 | 288 | 28 | 289 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l250_m2_e1 | * | 75.9087 | 66.0661 | 89.1975 | 97.9280 | 220 | 113 | 289 | 35 | 17 | 48.5714 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 66.2973 | 49.9283 | 98.6348 | 46.2385 | 348 | 349 | 289 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 39.4270 | 89.8476 | 0 | 0 | 289 | 444 | 84 | 18.9189 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.8841 | 77.2727 | 96.6555 | 54.2813 | 289 | 85 | 289 | 10 | 9 | 90.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | homalt | 81.4736 | 82.2350 | 80.7263 | 86.0483 | 287 | 62 | 289 | 69 | 57 | 82.6087 | |
| hfeng-pmm2 | INDEL | D1_5 | HG002compoundhet | homalt | 89.0601 | 99.3127 | 80.7263 | 78.1840 | 289 | 2 | 289 | 69 | 69 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | * | 96.6555 | 94.7541 | 98.6348 | 83.9364 | 289 | 16 | 289 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002compoundhet | homalt | 91.1672 | 99.3127 | 84.2566 | 74.7609 | 289 | 2 | 289 | 54 | 53 | 98.1481 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | * | 95.6954 | 94.7541 | 96.6555 | 94.7800 | 289 | 16 | 289 | 10 | 3 | 30.0000 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 76.5563 | 99.3127 | 62.2845 | 86.2762 | 289 | 2 | 289 | 175 | 165 | 94.2857 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 86.6885 | 80.3324 | 94.1368 | 55.4427 | 290 | 71 | 289 | 18 | 5 | 27.7778 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | het | 92.7769 | 91.1672 | 94.4444 | 92.4314 | 289 | 28 | 289 | 17 | 9 | 52.9412 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 87.0277 | 99.2593 | 77.4799 | 58.6932 | 402 | 3 | 289 | 84 | 83 | 98.8095 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.8841 | 77.2727 | 96.6555 | 54.2113 | 289 | 85 | 289 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | * | map_l150_m0_e0 | homalt | 97.2434 | 98.1707 | 96.3333 | 91.9420 | 161 | 3 | 289 | 11 | 11 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 96.2076 | 93.2907 | 99.3127 | 27.2500 | 292 | 21 | 289 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 87.3112 | 81.6384 | 93.8312 | 58.9880 | 289 | 65 | 289 | 19 | 5 | 26.3158 | |
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | * | 93.0757 | 94.7541 | 91.4557 | 97.2688 | 289 | 16 | 289 | 27 | 2 | 7.4074 | |
| ckim-vqsr | INDEL | D1_5 | HG002compoundhet | homalt | 79.0191 | 99.6564 | 65.4628 | 87.5701 | 290 | 1 | 290 | 153 | 152 | 99.3464 | |
| ckim-vqsr | SNP | * | HG002complexvar | hetalt | 96.6667 | 93.5484 | 100.0000 | 40.6953 | 290 | 20 | 290 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | HG002complexvar | hetalt | 96.6667 | 93.5484 | 100.0000 | 40.6953 | 290 | 20 | 290 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 80.0000 | 99.6564 | 66.8203 | 87.9210 | 290 | 1 | 290 | 144 | 143 | 99.3056 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.3433 | 50.9434 | 99.3151 | 42.0635 | 270 | 260 | 290 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 86.7340 | 86.1272 | 87.3494 | 72.8980 | 298 | 48 | 290 | 42 | 40 | 95.2381 | |
| ckim-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 79.0191 | 99.6564 | 65.4628 | 87.5701 | 290 | 1 | 290 | 153 | 152 | 99.3464 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.2022 | 93.2476 | 87.3494 | 68.7382 | 290 | 21 | 290 | 42 | 36 | 85.7143 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.4026 | 94.9367 | 100.0000 | 26.5823 | 225 | 12 | 290 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | HG002compoundhet | homalt | 77.2304 | 99.6564 | 63.0435 | 84.6769 | 290 | 1 | 290 | 170 | 169 | 99.4118 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | hetalt | 91.5858 | 84.4776 | 100.0000 | 64.2417 | 283 | 52 | 290 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | het | 97.7952 | 96.3211 | 99.3151 | 89.0923 | 288 | 11 | 290 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m1_e0 | het | 93.2578 | 98.3278 | 88.6850 | 92.8163 | 294 | 5 | 290 | 37 | 13 | 35.1351 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 65.1353 | 53.6585 | 82.8571 | 85.6026 | 198 | 171 | 290 | 60 | 5 | 8.3333 | |
| jmaeng-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 78.1671 | 99.6564 | 64.3016 | 87.6742 | 290 | 1 | 290 | 161 | 160 | 99.3789 | |
| jli-custom | INDEL | D1_5 | HG002compoundhet | homalt | 86.9565 | 99.6564 | 77.1277 | 84.9600 | 290 | 1 | 290 | 86 | 84 | 97.6744 | |
| jlack-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 69.2124 | 99.6564 | 53.0165 | 77.8632 | 290 | 1 | 290 | 257 | 257 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002compoundhet | homalt | 72.9560 | 99.6564 | 57.5397 | 87.1560 | 290 | 1 | 290 | 214 | 213 | 99.5327 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 79.6703 | 99.6564 | 66.3616 | 87.7109 | 290 | 1 | 290 | 147 | 146 | 99.3197 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.7289 | 97.8070 | 97.6510 | 89.7805 | 223 | 5 | 291 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.0497 | 90.1554 | 60.0000 | 90.1623 | 348 | 38 | 291 | 194 | 26 | 13.4021 | |
| qzeng-custom | INDEL | C1_5 | * | * | 82.3488 | 80.0000 | 84.8397 | 96.6709 | 8 | 2 | 291 | 52 | 5 | 9.6154 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 84.5480 | 74.7368 | 97.3244 | 58.8721 | 284 | 96 | 291 | 8 | 7 | 87.5000 | |