PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58451-58500 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6989 | 94.3463 | 97.0909 | 72.3061 | 267 | 16 | 267 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4427 | 99.6296 | 99.2565 | 60.1481 | 269 | 1 | 267 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 64.4180 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4413 | 100.0000 | 98.8889 | 66.0804 | 267 | 0 | 267 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4427 | 99.6296 | 99.2565 | 62.6389 | 269 | 1 | 267 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8145 | 99.6296 | 100.0000 | 63.2231 | 269 | 1 | 267 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 66.2907 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8145 | 99.6296 | 100.0000 | 64.6358 | 269 | 1 | 267 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8131 | 100.0000 | 99.6269 | 65.1948 | 267 | 0 | 267 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 66.1635 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8145 | 99.6296 | 100.0000 | 55.7214 | 269 | 1 | 267 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.6492 | 95.4064 | 100.0000 | 61.3043 | 270 | 13 | 267 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 78.4355 | 65.1515 | 98.5240 | 37.7011 | 301 | 161 | 267 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m0_e0 | * | 62.6026 | 49.1713 | 86.1290 | 76.1722 | 267 | 276 | 267 | 43 | 36 | 83.7209 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8145 | 99.6296 | 100.0000 | 64.7757 | 269 | 1 | 267 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 66.2060 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8145 | 99.6296 | 100.0000 | 63.3242 | 269 | 1 | 267 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 66.5423 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 77.1180 | 63.2035 | 98.8889 | 37.9310 | 292 | 170 | 267 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0758 | 99.2593 | 98.8930 | 58.8771 | 268 | 2 | 268 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.9718 | 91.0394 | 99.2593 | 62.7586 | 254 | 25 | 268 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | het | 95.1158 | 91.3043 | 99.2593 | 81.1453 | 273 | 26 | 268 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002compoundhet | homalt | 94.9357 | 94.5017 | 95.3737 | 63.6951 | 275 | 16 | 268 | 13 | 13 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | * | 95.5142 | 92.0415 | 99.2593 | 85.2378 | 266 | 23 | 268 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.7777 | 98.5185 | 82.4615 | 65.1288 | 266 | 4 | 268 | 57 | 36 | 63.1579 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2068 | 78.9017 | 100.0000 | 60.9898 | 273 | 73 | 268 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | homalt | 95.1935 | 94.0141 | 96.4029 | 91.9583 | 267 | 17 | 268 | 10 | 6 | 60.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.9718 | 91.0394 | 99.2593 | 62.7586 | 254 | 25 | 268 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | homalt | 28.5867 | 16.6770 | 100.0000 | 97.2814 | 268 | 1339 | 268 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.0890 | 20.6844 | 39.2387 | 39.7707 | 272 | 1043 | 268 | 415 | 363 | 87.4699 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.3930 | 81.0811 | 81.7073 | 53.8028 | 180 | 42 | 268 | 60 | 33 | 55.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 77.4922 | 85.9848 | 70.5263 | 85.7250 | 227 | 37 | 268 | 112 | 12 | 10.7143 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | het | 78.1739 | 73.9003 | 82.9721 | 96.4230 | 252 | 89 | 268 | 55 | 9 | 16.3636 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.6603 | 88.6076 | 97.1014 | 74.9319 | 280 | 36 | 268 | 8 | 7 | 87.5000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.1677 | 91.3978 | 99.2620 | 64.3890 | 255 | 24 | 269 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 87.3595 | 78.0059 | 99.2620 | 52.7875 | 266 | 75 | 269 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 67.8674 | 53.7223 | 92.1233 | 62.9442 | 267 | 230 | 269 | 23 | 17 | 73.9130 | |
| ckim-isaac | SNP | tv | map_l250_m0_e0 | het | 63.7441 | 47.0280 | 98.8971 | 94.7702 | 269 | 303 | 269 | 3 | 1 | 33.3333 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.6407 | 97.4638 | 97.8182 | 91.2809 | 269 | 7 | 269 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | * | 68.1876 | 51.8304 | 99.6296 | 96.3966 | 269 | 250 | 269 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.0050 | 89.8734 | 98.5348 | 73.8506 | 284 | 32 | 269 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 76.2838 | 63.1068 | 96.4158 | 95.2136 | 195 | 114 | 269 | 10 | 6 | 60.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.7142 | 99.2593 | 98.1752 | 59.8829 | 268 | 2 | 269 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.1288 | 90.9722 | 95.3901 | 71.8563 | 262 | 26 | 269 | 13 | 1 | 7.6923 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.9964 | 97.4638 | 98.5348 | 91.1104 | 269 | 7 | 269 | 4 | 2 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 88.5246 | 100.0000 | 79.4118 | 64.9485 | 153 | 0 | 270 | 70 | 69 | 98.5714 | |
| ckim-isaac | INDEL | D6_15 | HG002compoundhet | het | 43.7639 | 83.8785 | 29.6053 | 44.9275 | 718 | 138 | 270 | 642 | 608 | 94.7040 | |
| ckim-isaac | INDEL | D6_15 | map_siren | * | 68.4305 | 53.2417 | 95.7447 | 78.2743 | 271 | 238 | 270 | 12 | 10 | 83.3333 | |
| jpowers-varprowl | INDEL | * | map_l250_m1_e0 | * | 90.7563 | 88.5246 | 93.1034 | 96.3179 | 270 | 35 | 270 | 20 | 12 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5127 | 95.9108 | 97.1223 | 74.2593 | 258 | 11 | 270 | 8 | 3 | 37.5000 | |