PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58101-58150 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002complexvar | hetalt | 85.0270 | 74.6269 | 98.7952 | 62.9464 | 250 | 85 | 246 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.0938 | 95.3488 | 96.8504 | 89.2962 | 246 | 12 | 246 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2553 | 90.5797 | 96.0938 | 89.2437 | 250 | 26 | 246 | 10 | 1 | 10.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.7717 | 31.2245 | 36.7713 | 63.1405 | 153 | 337 | 246 | 423 | 326 | 77.0686 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 42.6022 | 32.6316 | 61.3466 | 68.7695 | 217 | 448 | 246 | 155 | 138 | 89.0323 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 90.9276 | 91.7603 | 90.1099 | 64.2202 | 245 | 22 | 246 | 27 | 5 | 18.5185 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 17.8608 | 9.9044 | 90.8088 | 60.0587 | 373 | 3393 | 247 | 25 | 25 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 17.8608 | 9.9044 | 90.8088 | 60.0587 | 373 | 3393 | 247 | 25 | 25 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.2963 | 95.7364 | 96.8627 | 87.5245 | 247 | 11 | 247 | 8 | 2 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m1_e0 | * | 96.1089 | 95.7364 | 96.4844 | 89.2797 | 247 | 11 | 247 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.3668 | 91.8216 | 99.1968 | 76.6417 | 247 | 22 | 247 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.8000 | 99.5968 | 98.0159 | 88.3710 | 247 | 1 | 247 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.0530 | 95.3668 | 98.8000 | 56.7474 | 247 | 12 | 247 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 79.6774 | 71.3873 | 90.1460 | 83.5435 | 247 | 99 | 247 | 27 | 5 | 18.5185 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 73.8416 | 59.0909 | 98.4064 | 66.3539 | 247 | 171 | 247 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 83.0948 | 80.0643 | 86.3636 | 58.1871 | 249 | 62 | 247 | 39 | 38 | 97.4359 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | het | 97.0550 | 98.0198 | 96.1089 | 90.1983 | 198 | 4 | 247 | 10 | 3 | 30.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.6087 | 95.3668 | 72.8614 | 66.3690 | 247 | 12 | 247 | 92 | 91 | 98.9130 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.3668 | 91.8216 | 99.1968 | 76.6417 | 247 | 22 | 247 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | * | 96.6732 | 95.7364 | 97.6285 | 88.1886 | 247 | 11 | 247 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | * | 97.0530 | 95.7364 | 98.4064 | 83.5733 | 247 | 11 | 247 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.6106 | 92.2747 | 99.1968 | 83.5535 | 215 | 18 | 247 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8665 | 90.7063 | 97.2549 | 74.0590 | 244 | 25 | 248 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.3980 | 99.5968 | 99.2000 | 86.4352 | 247 | 1 | 248 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 63.8458 | 46.9811 | 99.5984 | 65.4167 | 249 | 281 | 248 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 95.9381 | 92.8839 | 99.2000 | 63.6099 | 248 | 19 | 248 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.6289 | 95.1389 | 96.1240 | 80.6306 | 274 | 14 | 248 | 10 | 7 | 70.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.3107 | 96.1240 | 96.4981 | 87.2076 | 248 | 10 | 248 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.1176 | 95.7529 | 92.5373 | 60.1190 | 248 | 11 | 248 | 20 | 17 | 85.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.3314 | 91.1111 | 93.5849 | 51.5539 | 246 | 24 | 248 | 17 | 12 | 70.5882 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 43.4048 | 30.1435 | 77.5000 | 51.4416 | 252 | 584 | 248 | 72 | 70 | 97.2222 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | het | 64.6730 | 48.4436 | 97.2549 | 83.3442 | 249 | 265 | 248 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.3255 | 91.3534 | 95.3846 | 81.6901 | 243 | 23 | 248 | 12 | 11 | 91.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 87.6250 | 95.3668 | 81.0458 | 57.1429 | 247 | 12 | 248 | 58 | 41 | 70.6897 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.7383 | 95.4861 | 98.0237 | 80.6575 | 275 | 13 | 248 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 95.7529 | 96.1240 | 95.3846 | 89.1304 | 248 | 10 | 248 | 12 | 2 | 16.6667 | |
| ciseli-custom | INDEL | D16_PLUS | HG002complexvar | homalt | 50.2549 | 88.5813 | 35.0778 | 60.5689 | 256 | 33 | 248 | 459 | 398 | 86.7102 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 19.2271 | 11.7330 | 53.2189 | 75.6912 | 283 | 2129 | 248 | 218 | 182 | 83.4862 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0465 | 88.2353 | 98.4127 | 67.1447 | 45 | 6 | 248 | 4 | 1 | 25.0000 | |
| ciseli-custom | INDEL | * | map_l150_m1_e0 | homalt | 63.4966 | 53.8961 | 77.2586 | 91.1399 | 249 | 213 | 248 | 73 | 53 | 72.6027 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6263 | 91.4498 | 98.0315 | 68.7192 | 246 | 23 | 249 | 5 | 2 | 40.0000 | |
| ciseli-custom | INDEL | D1_5 | HG002compoundhet | homalt | 8.4350 | 85.5670 | 4.4361 | 66.5215 | 249 | 42 | 249 | 5364 | 5004 | 93.2886 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.7717 | 25.9481 | 48.3495 | 68.3855 | 260 | 742 | 249 | 266 | 179 | 67.2932 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 92.7783 | 91.2879 | 94.3182 | 84.3509 | 241 | 23 | 249 | 15 | 8 | 53.3333 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | * | 96.3250 | 96.5116 | 96.1390 | 87.0110 | 249 | 9 | 249 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.8013 | 95.8333 | 95.7692 | 80.3625 | 276 | 12 | 249 | 11 | 8 | 72.7273 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.7173 | 62.8571 | 98.4190 | 46.7368 | 220 | 130 | 249 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.1516 | 93.6330 | 98.8095 | 54.5946 | 250 | 17 | 249 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 22.2368 | 13.7681 | 57.7726 | 41.9919 | 57 | 357 | 249 | 182 | 181 | 99.4505 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 77.2658 | 65.4354 | 94.3182 | 71.1160 | 248 | 131 | 249 | 15 | 14 | 93.3333 | |