PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58051-58100 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e0 | * | 96.1200 | 94.3182 | 97.9920 | 81.1364 | 249 | 15 | 244 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 90.7805 | 84.2657 | 98.3871 | 60.8215 | 241 | 45 | 244 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.9356 | 91.3534 | 94.5736 | 81.3987 | 243 | 23 | 244 | 14 | 11 | 78.5714 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 65.0593 | 53.4989 | 82.9932 | 36.5011 | 237 | 206 | 244 | 50 | 34 | 68.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.7854 | 98.3871 | 99.1870 | 88.4507 | 244 | 4 | 244 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.3594 | 93.8224 | 87.1429 | 56.0440 | 243 | 16 | 244 | 36 | 30 | 83.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 92.6206 | 91.0853 | 94.2085 | 83.6799 | 235 | 23 | 244 | 15 | 8 | 53.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 55.6515 | 48.6166 | 65.0667 | 91.6126 | 246 | 260 | 244 | 131 | 111 | 84.7328 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9858 | 98.3871 | 99.5918 | 87.4101 | 244 | 4 | 244 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9597 | 91.0781 | 99.1870 | 75.5952 | 245 | 24 | 244 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.7573 | 90.7063 | 99.1870 | 77.2011 | 244 | 25 | 244 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.4625 | 82.9902 | 88.0866 | 50.9735 | 766 | 157 | 244 | 33 | 29 | 87.8788 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 87.7698 | 86.2191 | 89.3773 | 67.9201 | 244 | 39 | 244 | 29 | 29 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.1333 | 24.7505 | 50.1027 | 71.7681 | 248 | 754 | 244 | 243 | 215 | 88.4774 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 62.5395 | 49.1632 | 85.9155 | 86.2802 | 235 | 243 | 244 | 40 | 7 | 17.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | * | 94.9416 | 94.5736 | 95.3125 | 85.7936 | 244 | 14 | 244 | 12 | 6 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.7503 | 87.5000 | 90.0369 | 78.1275 | 252 | 36 | 244 | 27 | 25 | 92.5926 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | * | 96.4567 | 94.9612 | 98.0000 | 83.4107 | 245 | 13 | 245 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1903 | 98.7903 | 99.5935 | 85.8702 | 245 | 3 | 245 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.9898 | 93.7500 | 94.2308 | 79.6557 | 270 | 18 | 245 | 15 | 9 | 60.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1903 | 98.7903 | 99.5935 | 86.5058 | 245 | 3 | 245 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 92.8030 | 94.9612 | 90.7407 | 88.2660 | 245 | 13 | 245 | 25 | 3 | 12.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | * | 96.4567 | 94.9612 | 98.0000 | 85.8277 | 245 | 13 | 245 | 5 | 1 | 20.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.7266 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.4954 | 91.7293 | 95.3307 | 81.1445 | 244 | 22 | 245 | 12 | 9 | 75.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | * | 90.1715 | 88.0000 | 92.4528 | 85.4555 | 242 | 33 | 245 | 20 | 12 | 60.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.6018 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.7903 | 98.7903 | 98.7903 | 87.8491 | 245 | 3 | 245 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | het | 64.4737 | 48.2283 | 97.2222 | 82.1403 | 245 | 263 | 245 | 7 | 4 | 57.1429 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | * | 82.7722 | 73.3564 | 94.9612 | 95.8904 | 212 | 77 | 245 | 13 | 12 | 92.3077 | |
| mlin-fermikit | INDEL | * | map_l125_m0_e0 | het | 57.2159 | 41.5673 | 91.7603 | 82.1524 | 244 | 343 | 245 | 22 | 7 | 31.8182 | |
| anovak-vg | INDEL | D6_15 | map_siren | het | 77.1497 | 77.5000 | 76.8025 | 78.9021 | 217 | 63 | 245 | 74 | 50 | 67.5676 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.1564 | 94.4700 | 100.0000 | 39.0547 | 205 | 12 | 245 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.8280 | 96.1240 | 99.5935 | 81.4199 | 248 | 10 | 245 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.6018 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.8785 | 95.3488 | 92.4528 | 68.3014 | 246 | 12 | 245 | 20 | 12 | 60.0000 | |
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | homalt | 81.6095 | 75.9878 | 88.1295 | 56.7652 | 250 | 79 | 245 | 33 | 30 | 90.9091 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.9052 | 93.4028 | 96.4567 | 80.9738 | 269 | 19 | 245 | 9 | 6 | 66.6667 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 87.2483 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 70.1872 | 69.5761 | 70.8092 | 55.2972 | 279 | 122 | 245 | 101 | 98 | 97.0297 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | * | 77.5749 | 72.0930 | 83.9590 | 83.4182 | 186 | 72 | 246 | 47 | 43 | 91.4894 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 53.8085 | 55.7377 | 52.0085 | 38.7306 | 68 | 54 | 246 | 227 | 226 | 99.5595 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 62.7551 | 45.8955 | 99.1935 | 78.4909 | 246 | 290 | 246 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 88.1510 | 246 | 2 | 246 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 88.0424 | 246 | 2 | 246 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.4013 | 92.5651 | 94.2529 | 71.0322 | 249 | 20 | 246 | 15 | 2 | 13.3333 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.7694 | 88.7681 | 94.9807 | 88.6104 | 245 | 31 | 246 | 13 | 6 | 46.1538 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 86.9679 | 246 | 2 | 246 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m1_e0 | * | 97.2332 | 95.3488 | 99.1935 | 84.4709 | 246 | 12 | 246 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9970 | 91.8216 | 98.4000 | 75.9152 | 247 | 22 | 246 | 4 | 0 | 0.0000 | |