PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57351-57400 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 35.3312 | 205 | 2 | 205 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9267 | 100.0000 | 94.0367 | 91.2309 | 205 | 0 | 205 | 13 | 11 | 84.6154 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.9267 | 100.0000 | 94.0367 | 91.2309 | 205 | 0 | 205 | 13 | 11 | 84.6154 | |
| dgrover-gatk | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 35.9375 | 205 | 2 | 205 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0338 | 100.0000 | 98.0861 | 79.6693 | 208 | 0 | 205 | 4 | 2 | 50.0000 | |
| jli-custom | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 36.3354 | 205 | 2 | 205 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 39.5280 | 205 | 2 | 205 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1596 | 93.2432 | 97.1564 | 60.5607 | 207 | 15 | 205 | 6 | 4 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e1 | het | 96.0187 | 97.1564 | 94.9074 | 95.5891 | 205 | 6 | 205 | 11 | 2 | 18.1818 | |
| hfeng-pmm1 | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 38.6228 | 205 | 2 | 205 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.7052 | 92.7928 | 96.6981 | 61.0294 | 206 | 16 | 205 | 7 | 5 | 71.4286 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | het | 94.6882 | 97.1564 | 92.3423 | 96.4734 | 205 | 6 | 205 | 17 | 2 | 11.7647 | |
| hfeng-pmm3 | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 37.3089 | 205 | 2 | 205 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.7875 | 97.1564 | 81.7460 | 71.8121 | 205 | 6 | 206 | 46 | 45 | 97.8261 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.9467 | 93.2432 | 96.7136 | 59.8113 | 207 | 15 | 206 | 7 | 5 | 71.4286 | |
| ckim-gatk | INDEL | * | map_l250_m2_e1 | het | 89.9563 | 97.6303 | 83.4008 | 97.6831 | 206 | 5 | 206 | 41 | 2 | 4.8781 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 54.1379 | 40.1544 | 83.0645 | 82.5475 | 208 | 310 | 206 | 42 | 33 | 78.5714 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.5657 | 99.5192 | 97.6303 | 79.2527 | 207 | 1 | 206 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | het | 79.5322 | 97.1564 | 67.3203 | 96.9369 | 205 | 6 | 206 | 100 | 13 | 13.0000 | |
| gduggal-snapfb | INDEL | * | func_cds | homalt | 95.3704 | 91.1504 | 100.0000 | 31.5615 | 206 | 20 | 206 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | HG002complexvar | hetalt | 99.5169 | 99.5169 | 99.5169 | 46.5116 | 206 | 1 | 206 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 27.1199 | 15.9420 | 90.7489 | 71.4824 | 143 | 754 | 206 | 21 | 19 | 90.4762 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 28.9733 | 87.0161 | 0 | 0 | 206 | 505 | 54 | 10.6931 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 80.4688 | 100.0000 | 67.3203 | 93.0926 | 1 | 0 | 206 | 100 | 19 | 19.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 63.6275 | 87.0968 | 50.1217 | 72.1733 | 54 | 8 | 206 | 205 | 170 | 82.9268 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.4001 | 93.6937 | 97.1698 | 60.5948 | 208 | 14 | 206 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | SNP | ti | HG002complexvar | hetalt | 81.5842 | 99.5169 | 69.1275 | 54.1538 | 206 | 1 | 206 | 92 | 22 | 23.9130 | |
| rpoplin-dv42 | SNP | ti | HG002complexvar | hetalt | 99.0385 | 99.5169 | 98.5646 | 34.6875 | 206 | 1 | 206 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1114 | 91.8919 | 98.5646 | 61.0075 | 204 | 18 | 206 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | homalt | 86.0971 | 79.0698 | 94.4954 | 84.8401 | 204 | 54 | 206 | 12 | 11 | 91.6667 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 80.4268 | 75.9398 | 85.4772 | 80.3586 | 202 | 64 | 206 | 35 | 25 | 71.4286 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.4954 | 90.3509 | 99.0385 | 88.6957 | 206 | 22 | 206 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.9717 | 94.1441 | 95.8140 | 64.6962 | 209 | 13 | 206 | 9 | 6 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.5646 | 99.0385 | 98.0952 | 80.8743 | 206 | 2 | 206 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 84.0816 | 96.2647 | 0 | 0 | 206 | 39 | 28 | 71.7949 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5169 | 100.0000 | 99.0385 | 92.1212 | 1 | 0 | 206 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.9659 | 85.8300 | 94.5205 | 76.9716 | 212 | 35 | 207 | 12 | 8 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 81.0762 | 207 | 1 | 207 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m0_e0 | homalt | 92.3286 | 87.1951 | 98.1043 | 88.9817 | 143 | 21 | 207 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | INDEL | I6_15 | HG002complexvar | hetalt | 60.2641 | 50.3679 | 75.0000 | 58.1818 | 616 | 607 | 207 | 69 | 66 | 95.6522 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 63.3474 | 64.9842 | 61.7910 | 92.1527 | 206 | 111 | 207 | 128 | 110 | 85.9375 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.7368 | 98.1043 | 91.5929 | 67.5287 | 207 | 4 | 207 | 19 | 18 | 94.7368 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 94.9153 | 90.3226 | 100.0000 | 39.1176 | 196 | 21 | 207 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 80.8182 | 207 | 1 | 207 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1996 | 94.1441 | 96.2791 | 59.2803 | 209 | 13 | 207 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1242 | 97.2222 | 99.0431 | 59.4175 | 210 | 6 | 207 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | HG002complexvar | hetalt | 99.0419 | 99.5169 | 98.5714 | 37.5000 | 206 | 1 | 207 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0431 | 98.1043 | 100.0000 | 47.8589 | 207 | 4 | 207 | 0 | 0 | ||