PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56701-56750 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 75.7686 | 61.6162 | 98.3607 | 87.4486 | 122 | 76 | 180 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.6742 | 85.1675 | 88.2353 | 70.5628 | 178 | 31 | 180 | 24 | 21 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | * | 74.6205 | 69.3798 | 80.7175 | 81.6461 | 179 | 79 | 180 | 43 | 33 | 76.7442 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 93.5065 | 97.2973 | 90.0000 | 97.0803 | 180 | 5 | 180 | 20 | 1 | 5.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 97.0350 | 97.2973 | 96.7742 | 95.1360 | 180 | 5 | 180 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | I1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 32.8358 | 180 | 0 | 180 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 25.9259 | 180 | 0 | 180 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 53.6324 | 61.8056 | 47.3684 | 65.3285 | 178 | 110 | 180 | 200 | 197 | 98.5000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | * | 66.5799 | 58.6885 | 76.9231 | 81.1897 | 179 | 126 | 180 | 54 | 53 | 98.1481 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 66.2963 | 49.5845 | 100.0000 | 63.9279 | 179 | 182 | 180 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.8022 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 71.4004 | 63.9576 | 80.8036 | 71.2821 | 181 | 102 | 181 | 43 | 31 | 72.0930 | |
| jpowers-varprowl | SNP | tv | map_l250_m0_e0 | homalt | 95.7672 | 93.7824 | 97.8378 | 95.4944 | 181 | 12 | 181 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | het | 94.5170 | 94.2708 | 94.7644 | 90.7191 | 181 | 11 | 181 | 10 | 1 | 10.0000 | |
| ckim-gatk | INDEL | I1_5 | func_cds | * | 99.1781 | 100.0000 | 98.3696 | 47.7273 | 180 | 0 | 181 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 92.1120 | 98.3696 | 86.6029 | 96.8600 | 181 | 3 | 181 | 28 | 1 | 3.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | homalt | 69.0840 | 52.7697 | 100.0000 | 91.9982 | 181 | 162 | 181 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.3469 | 85.7820 | 100.0000 | 39.8671 | 181 | 30 | 181 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 67.9174 | 51.7143 | 98.9071 | 58.0275 | 181 | 169 | 181 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.7554 | 24.6259 | 29.2880 | 56.6011 | 181 | 554 | 181 | 437 | 436 | 99.7712 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 70.9804 | 63.9576 | 79.7357 | 72.0099 | 181 | 102 | 181 | 46 | 33 | 71.7391 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.7665 | 14.5247 | 65.3430 | 41.4376 | 191 | 1124 | 181 | 96 | 38 | 39.5833 | |
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | homalt | 94.7644 | 93.7824 | 95.7672 | 97.4314 | 181 | 12 | 181 | 8 | 3 | 37.5000 | |
| bgallagher-sentieon | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 34.6429 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 96.2766 | 98.3696 | 94.2708 | 95.7248 | 181 | 3 | 181 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 34.4086 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | segdup | * | 96.5333 | 94.7644 | 98.3696 | 93.4752 | 181 | 10 | 181 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.6584 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | segdup | * | 97.0509 | 94.7644 | 99.4505 | 92.8823 | 181 | 10 | 181 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 90.2743 | 98.3696 | 83.4101 | 96.5457 | 181 | 3 | 181 | 36 | 1 | 2.7778 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.8106 | 91.8782 | 82.2727 | 58.6466 | 181 | 16 | 181 | 39 | 37 | 94.8718 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | het | 95.2632 | 95.2632 | 95.2632 | 95.6049 | 181 | 9 | 181 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 83.4101 | 90.0498 | 77.6824 | 80.0684 | 181 | 20 | 181 | 52 | 41 | 78.8462 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 87.5803 | 85.6459 | 89.6040 | 74.6550 | 179 | 30 | 181 | 21 | 11 | 52.3810 | |
| qzeng-custom | INDEL | D6_15 | segdup | * | 89.7775 | 93.1937 | 86.6029 | 93.7519 | 178 | 13 | 181 | 28 | 9 | 32.1429 | |
| ckim-vqsr | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 47.8632 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 35.1064 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | het | 95.5145 | 95.2632 | 95.7672 | 95.8815 | 181 | 9 | 181 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 97.8378 | 98.3696 | 97.3118 | 96.0180 | 181 | 3 | 181 | 5 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | homalt | 96.2766 | 93.7824 | 98.9071 | 92.7981 | 181 | 12 | 181 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | segdup | * | 96.2963 | 95.2880 | 97.3262 | 92.9726 | 182 | 9 | 182 | 5 | 5 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 96.2963 | 98.3784 | 94.3005 | 95.8016 | 182 | 3 | 182 | 11 | 1 | 9.0909 | |
| bgallagher-sentieon | INDEL | D6_15 | segdup | * | 95.2880 | 95.2880 | 95.2880 | 93.7724 | 182 | 9 | 182 | 9 | 5 | 55.5556 | |
| astatham-gatk | INDEL | * | map_l250_m1_e0 | het | 93.5733 | 95.7895 | 91.4573 | 96.4356 | 182 | 8 | 182 | 17 | 2 | 11.7647 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | hetalt | 99.7260 | 100.0000 | 99.4536 | 69.3980 | 30 | 0 | 182 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.0662 | 84.6154 | 62.7586 | 92.3219 | 187 | 34 | 182 | 108 | 16 | 14.8148 | |
| jli-custom | INDEL | D6_15 | segdup | * | 96.8085 | 95.2880 | 98.3784 | 93.0582 | 182 | 9 | 182 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | * | 95.0392 | 95.2880 | 94.7917 | 95.0541 | 182 | 9 | 182 | 10 | 4 | 40.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | het | 90.5473 | 95.7895 | 85.8491 | 97.7177 | 182 | 8 | 182 | 30 | 2 | 6.6667 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | het | 93.9975 | 89.1089 | 99.4536 | 79.7790 | 180 | 22 | 182 | 1 | 0 | 0.0000 | |