PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56601-56650 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | het | 94.6019 | 92.1053 | 97.2376 | 95.3423 | 175 | 15 | 176 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 54.0780 | 37.2951 | 98.3240 | 67.3953 | 182 | 306 | 176 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e1 | * | 67.9623 | 66.1818 | 69.8413 | 89.4073 | 182 | 93 | 176 | 76 | 63 | 82.8947 | |
| gduggal-bwafb | INDEL | D6_15 | segdup | * | 92.1680 | 88.4817 | 96.1749 | 92.8987 | 169 | 22 | 176 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | * | 76.6354 | 64.3939 | 94.6237 | 81.8182 | 170 | 94 | 176 | 10 | 9 | 90.0000 | |
| gduggal-snapfb | INDEL | I1_5 | func_cds | * | 96.9697 | 97.7778 | 96.1749 | 35.5634 | 176 | 4 | 176 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | ti | HG002complexvar | hetalt | 90.1007 | 85.9903 | 94.6237 | 41.1392 | 178 | 29 | 176 | 10 | 10 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.3333 | 96.7213 | 100.0000 | 68.6833 | 118 | 4 | 176 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 78.3964 | 77.1930 | 79.6380 | 89.0810 | 176 | 52 | 176 | 45 | 36 | 80.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3146 | 98.3051 | 98.3240 | 64.3426 | 174 | 3 | 176 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 96.7033 | 95.6522 | 97.7778 | 95.0685 | 176 | 8 | 176 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.6433 | 91.1458 | 86.2745 | 46.1741 | 175 | 17 | 176 | 28 | 19 | 67.8571 | |
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | hetalt | 91.1048 | 83.6629 | 100.0000 | 61.9355 | 8547 | 1669 | 177 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | * | 96.7213 | 95.6757 | 97.7901 | 95.1552 | 177 | 8 | 177 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 82.6785 | 85.8537 | 79.7297 | 84.6367 | 176 | 29 | 177 | 45 | 26 | 57.7778 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 82.6785 | 85.8537 | 79.7297 | 84.6367 | 176 | 29 | 177 | 45 | 26 | 57.7778 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | * | 98.6072 | 98.3333 | 98.8827 | 35.1449 | 177 | 3 | 177 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7183 | 99.4382 | 100.0000 | 81.2500 | 177 | 1 | 177 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l250_m2_e1 | homalt | 31.5227 | 18.7104 | 100.0000 | 97.3700 | 177 | 769 | 177 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | homalt | 96.7898 | 97.3913 | 96.1957 | 95.4410 | 112 | 3 | 177 | 7 | 7 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 87.4670 | 80.5556 | 95.6757 | 56.8765 | 174 | 42 | 177 | 8 | 7 | 87.5000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | * | 96.4578 | 96.1957 | 96.7213 | 94.6460 | 177 | 7 | 177 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | het | 94.6524 | 93.1579 | 96.1957 | 95.0297 | 177 | 13 | 177 | 7 | 1 | 14.2857 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4034 | 93.5484 | 99.4382 | 67.4589 | 174 | 12 | 177 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | segdup | * | 99.1468 | 98.8571 | 99.4382 | 92.6110 | 173 | 2 | 177 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | * | 95.4265 | 96.7391 | 94.1489 | 95.7629 | 178 | 6 | 177 | 11 | 2 | 18.1818 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 94.6665 | 97.2826 | 92.1875 | 94.6711 | 179 | 5 | 177 | 15 | 1 | 6.6667 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 24.3587 | 15.4953 | 56.9132 | 61.6995 | 183 | 998 | 177 | 134 | 97 | 72.3881 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7183 | 99.4382 | 100.0000 | 81.2500 | 177 | 1 | 177 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7183 | 99.4382 | 100.0000 | 81.1902 | 177 | 1 | 177 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | het | 90.3553 | 93.6842 | 87.2549 | 97.7493 | 178 | 12 | 178 | 26 | 1 | 3.8462 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 97.2678 | 96.7391 | 97.8022 | 95.3842 | 178 | 6 | 178 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1445 | 93.5484 | 98.8889 | 67.7996 | 174 | 12 | 178 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | HG002complexvar | hetalt | 88.4177 | 83.7117 | 93.6842 | 66.0714 | 848 | 165 | 178 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | het | 95.9569 | 92.7083 | 99.4413 | 88.6493 | 178 | 14 | 178 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | * | 96.4770 | 96.2162 | 96.7391 | 94.7489 | 178 | 7 | 178 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | segdup | * | 95.4424 | 93.1937 | 97.8022 | 92.3817 | 178 | 13 | 178 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | * | 95.1872 | 96.7391 | 93.6842 | 95.1568 | 178 | 6 | 178 | 12 | 1 | 8.3333 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.7526 | 86.4078 | 97.8022 | 85.8034 | 178 | 28 | 178 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.8307 | 92.4731 | 99.4413 | 69.4539 | 172 | 14 | 178 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 82.0276 | 96.1532 | 0 | 1 | 178 | 39 | 2 | 5.1282 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 82.0276 | 96.1532 | 0 | 1 | 178 | 39 | 2 | 5.1282 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 94.6948 | 97.2973 | 92.2280 | 94.7767 | 180 | 5 | 178 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0545 | 96.8421 | 97.2678 | 86.8156 | 92 | 3 | 178 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | I1_5 | func_cds | * | 99.4429 | 99.4444 | 99.4413 | 30.0781 | 179 | 1 | 178 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | het | 92.0043 | 94.2105 | 89.8990 | 96.4744 | 179 | 11 | 178 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | * | 95.4509 | 96.7568 | 94.1799 | 95.8498 | 179 | 6 | 178 | 11 | 2 | 18.1818 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 80.8396 | 178 | 0 | 178 | 0 | 0 | ||
| ciseli-custom | SNP | * | HG002complexvar | hetalt | 70.4724 | 57.7419 | 90.4040 | 39.8176 | 179 | 131 | 179 | 19 | 9 | 47.3684 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 32.0359 | 80.0905 | 20.0224 | 83.6832 | 177 | 44 | 179 | 715 | 42 | 5.8741 | |