PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56001-56050 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 67.4035 | 79.2818 | 58.6207 | 66.4093 | 287 | 75 | 153 | 108 | 102 | 94.4444 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5138 | 97.4194 | 95.6250 | 82.3982 | 151 | 4 | 153 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 46.1806 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.8354 | 100.0000 | 93.8650 | 76.7806 | 153 | 0 | 153 | 10 | 9 | 90.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 90.0000 | 85.9551 | 94.4444 | 70.7581 | 153 | 25 | 153 | 9 | 8 | 88.8889 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.1538 | 100.0000 | 88.9535 | 77.1580 | 153 | 0 | 153 | 19 | 18 | 94.7368 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 83.4056 | 152 | 3 | 153 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7636 | 100.0000 | 95.6250 | 77.4648 | 153 | 0 | 153 | 7 | 6 | 85.7143 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.2093 | 152 | 3 | 153 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0769 | 100.0000 | 96.2264 | 77.1879 | 153 | 0 | 153 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0769 | 100.0000 | 96.2264 | 77.0893 | 153 | 0 | 153 | 6 | 5 | 83.3333 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | het | 74.7095 | 69.0476 | 81.3830 | 98.2825 | 145 | 65 | 153 | 35 | 5 | 14.2857 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 55.9506 | 88.4848 | 40.9091 | 87.7738 | 146 | 19 | 153 | 221 | 13 | 5.8824 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | het | 74.8369 | 69.1943 | 81.4815 | 98.3230 | 146 | 65 | 154 | 35 | 5 | 14.2857 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | * | 60.8455 | 60.3448 | 61.3546 | 79.4431 | 70 | 46 | 154 | 97 | 79 | 81.4433 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | homalt | 69.3694 | 67.5439 | 71.2963 | 80.2016 | 154 | 74 | 154 | 62 | 57 | 91.9355 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 68.4444 | 95.6522 | 53.2872 | 40.7787 | 154 | 7 | 154 | 135 | 135 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | segdup | * | 91.9403 | 88.0000 | 96.2500 | 90.6268 | 154 | 21 | 154 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 56.8558 | 74.1379 | 46.1078 | 77.3098 | 86 | 30 | 154 | 180 | 4 | 2.2222 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 56.6467 | 74.1379 | 45.8333 | 77.4799 | 86 | 30 | 154 | 182 | 4 | 2.1978 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.4623 | 92.1212 | 85.0829 | 92.3011 | 152 | 13 | 154 | 27 | 7 | 25.9259 | |
| mlin-fermikit | INDEL | * | map_siren | hetalt | 76.4268 | 62.3482 | 98.7179 | 84.3687 | 154 | 93 | 154 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | het | 91.7507 | 86.6667 | 97.4684 | 83.5588 | 117 | 18 | 154 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | hetalt | 99.3548 | 100.0000 | 98.7179 | 69.3517 | 41 | 0 | 154 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 25.9640 | 21.0884 | 33.7719 | 34.7639 | 155 | 580 | 154 | 302 | 292 | 96.6887 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | homalt | 95.6522 | 93.9024 | 97.4684 | 94.4347 | 154 | 10 | 154 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 79.2924 | 78.0000 | 80.6283 | 58.3878 | 156 | 44 | 154 | 37 | 34 | 91.8919 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.4481 | 96.8153 | 98.0892 | 60.3535 | 152 | 5 | 154 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2725 | 95.2756 | 99.3548 | 67.4370 | 121 | 6 | 154 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 49.0196 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | * | tech_badpromoters | * | 98.0932 | 98.7261 | 97.4684 | 50.9317 | 155 | 2 | 154 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6764 | 99.3548 | 100.0000 | 82.9268 | 154 | 1 | 154 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.3856 | 74.8603 | 99.3548 | 23.2673 | 134 | 45 | 154 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.9866 | 84.1808 | 72.6415 | 67.5841 | 149 | 28 | 154 | 58 | 58 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7179 | 98.0892 | 99.3548 | 70.4198 | 154 | 3 | 154 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 98.7179 | 82.7624 | 0 | 0 | 154 | 2 | 1 | 50.0000 | |
| jli-custom | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 48.6842 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6764 | 99.3548 | 100.0000 | 84.7525 | 154 | 1 | 154 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 49.3506 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3506 | 98.7097 | 100.0000 | 81.9036 | 153 | 2 | 154 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7179 | 98.0892 | 99.3548 | 69.6078 | 154 | 3 | 154 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | map_siren | hetalt | 51.9925 | 36.0324 | 93.3333 | 92.3928 | 89 | 158 | 154 | 11 | 9 | 81.8182 | |
| ckim-vqsr | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 49.0196 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | homalt | 74.7573 | 59.6899 | 100.0000 | 74.1176 | 154 | 104 | 154 | 0 | 0 | ||
| dgrover-gatk | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 49.6774 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3548 | 99.3548 | 99.3548 | 83.2432 | 154 | 1 | 154 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7179 | 98.0892 | 99.3548 | 63.6150 | 154 | 3 | 154 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | het | 54.9434 | 79.8077 | 41.8919 | 76.8894 | 166 | 42 | 155 | 215 | 211 | 98.1395 | |
| rpoplin-dv42 | SNP | * | tech_badpromoters | * | 98.7261 | 98.7261 | 98.7261 | 46.9595 | 155 | 2 | 155 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m1_e0 | * | 92.5373 | 90.6433 | 94.5122 | 95.5544 | 155 | 16 | 155 | 9 | 4 | 44.4444 | |