PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55901-55950 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.2789 | 94.7020 | 100.0000 | 48.0969 | 143 | 8 | 150 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.0874 | 100.0000 | 94.3396 | 74.8418 | 153 | 0 | 150 | 9 | 8 | 88.8889 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 24.2522 | 20.4082 | 29.8805 | 51.4507 | 150 | 585 | 150 | 352 | 340 | 96.5909 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 43.4690 | 29.6943 | 81.0811 | 66.1792 | 204 | 483 | 150 | 35 | 34 | 97.1429 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | het | 91.2869 | 91.1111 | 91.4634 | 82.8452 | 123 | 12 | 150 | 14 | 13 | 92.8571 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | * | 65.2174 | 48.3871 | 100.0000 | 96.3154 | 150 | 160 | 150 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.6528 | 90.4762 | 94.9367 | 73.7977 | 152 | 16 | 150 | 8 | 7 | 87.5000 | |
| asubramanian-gatk | INDEL | * | map_l150_m0_e0 | homalt | 94.6072 | 90.8537 | 98.6842 | 92.1080 | 149 | 15 | 150 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 45.3035 | 36.1272 | 60.7287 | 71.8358 | 125 | 221 | 150 | 97 | 38 | 39.1753 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.2789 | 94.7020 | 100.0000 | 48.6301 | 143 | 8 | 150 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l250_m2_e0 | het | 65.7491 | 68.0952 | 63.5593 | 96.7649 | 143 | 67 | 150 | 86 | 29 | 33.7209 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 53.8849 | 51.2397 | 56.8182 | 60.5970 | 124 | 118 | 150 | 114 | 77 | 67.5439 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 30.5499 | 87.9361 | 0 | 0 | 150 | 341 | 58 | 17.0088 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 30.5499 | 87.9361 | 0 | 0 | 150 | 341 | 58 | 17.0088 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | * | 84.6900 | 76.4398 | 94.9367 | 90.2107 | 146 | 45 | 150 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 96.7742 | 96.1376 | 0 | 0 | 150 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.2859 | 92.6829 | 98.0392 | 77.6316 | 152 | 12 | 150 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0354 | 98.0892 | 100.0000 | 53.7037 | 154 | 3 | 150 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | het | 6.7114 | 57.6923 | 3.5629 | 37.9971 | 120 | 88 | 150 | 4060 | 4050 | 99.7537 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 81.5154 | 91.4474 | 73.5294 | 93.1267 | 139 | 13 | 150 | 54 | 3 | 5.5556 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3607 | 96.7742 | 100.0000 | 81.6176 | 150 | 5 | 150 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 94.7291 | 91.0714 | 98.6928 | 74.8768 | 153 | 15 | 151 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 83.2757 | 88.4848 | 78.6458 | 93.1794 | 146 | 19 | 151 | 41 | 12 | 29.2683 | |
| gduggal-bwaplat | INDEL | D6_15 | segdup | * | 87.8562 | 79.5812 | 98.0519 | 96.2676 | 152 | 39 | 151 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D1_5 | func_cds | * | 94.6708 | 94.9686 | 94.3750 | 37.7432 | 151 | 8 | 151 | 9 | 7 | 77.7778 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 89.6142 | 93.7888 | 85.7955 | 36.9176 | 151 | 10 | 151 | 25 | 25 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6928 | 97.4194 | 100.0000 | 83.3333 | 151 | 4 | 151 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6562 | 96.0265 | 99.3421 | 59.0296 | 145 | 6 | 151 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.5453 | 96.1290 | 94.9686 | 82.4503 | 149 | 6 | 151 | 8 | 6 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 42.6554 | 78.6458 | 29.2636 | 46.1940 | 151 | 41 | 151 | 365 | 351 | 96.1644 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | homalt | 69.1076 | 53.1690 | 98.6928 | 80.5591 | 151 | 133 | 151 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l250_m1_e0 | * | 65.7952 | 49.5082 | 98.0519 | 96.9691 | 151 | 154 | 151 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.6434 | 24.0260 | 32.5431 | 70.1799 | 148 | 468 | 151 | 313 | 312 | 99.6805 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 15.4909 | 90.1316 | 8.4736 | 78.2178 | 137 | 15 | 151 | 1631 | 23 | 1.4102 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 15.1782 | 85.4545 | 8.3287 | 79.8084 | 141 | 24 | 151 | 1662 | 21 | 1.2635 | |
| anovak-vg | INDEL | * | func_cds | het | 74.7761 | 69.6262 | 80.7487 | 43.8438 | 149 | 65 | 151 | 36 | 19 | 52.7778 | |
| anovak-vg | INDEL | * | map_l250_m2_e1 | het | 65.6155 | 68.2464 | 63.1799 | 96.7945 | 144 | 67 | 151 | 88 | 29 | 32.9545 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.7100 | 20.4082 | 48.3974 | 46.2069 | 150 | 585 | 151 | 161 | 125 | 77.6398 | |
| anovak-vg | INDEL | I1_5 | map_l150_m2_e1 | het | 50.9949 | 42.2713 | 64.2553 | 93.6383 | 134 | 183 | 151 | 84 | 8 | 9.5238 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 45.1042 | 39.2655 | 52.9825 | 57.7778 | 139 | 215 | 151 | 134 | 99 | 73.8806 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 82.4480 | 151 | 4 | 152 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.1246 | 96.8153 | 97.4359 | 68.8623 | 152 | 5 | 152 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | tech_badpromoters | * | 97.7492 | 96.8153 | 98.7013 | 49.3421 | 152 | 5 | 152 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.8690 | 94.5122 | 99.3464 | 73.7564 | 155 | 9 | 152 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.5612 | 96.1290 | 95.0000 | 81.4600 | 149 | 6 | 152 | 8 | 7 | 87.5000 | |
| qzeng-custom | SNP | * | tech_badpromoters | * | 96.8273 | 98.0892 | 95.5975 | 47.8689 | 154 | 3 | 152 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.6792 | 24.6753 | 34.2342 | 68.3084 | 152 | 464 | 152 | 292 | 286 | 97.9452 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 57.2505 | 41.9890 | 89.9408 | 89.1458 | 152 | 210 | 152 | 17 | 17 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | het | 92.3597 | 87.7863 | 97.4359 | 83.4921 | 115 | 16 | 152 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.0228 | 100.0000 | 98.0645 | 81.3926 | 6 | 0 | 152 | 3 | 2 | 66.6667 | |