PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55301-55350 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9348 | 96.9466 | 96.9231 | 83.3760 | 127 | 4 | 126 | 4 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m0_e0 | homalt | 67.7419 | 60.5769 | 76.8293 | 73.2463 | 126 | 82 | 126 | 38 | 36 | 94.7368 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | het | 58.8785 | 42.1405 | 97.6744 | 82.3529 | 126 | 173 | 126 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.6804 | 77.2455 | 96.1832 | 69.2488 | 129 | 38 | 126 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.0400 | 86.8852 | 91.3043 | 57.9268 | 106 | 16 | 126 | 12 | 11 | 91.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | homalt | 96.9096 | 97.6471 | 96.1832 | 92.2623 | 83 | 2 | 126 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | * | 86.6250 | 84.6154 | 88.7324 | 87.5548 | 99 | 18 | 126 | 16 | 16 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 89.6797 | 96.1832 | 84.0000 | 91.6574 | 126 | 5 | 126 | 24 | 3 | 12.5000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.7138 | 93.2886 | 96.1832 | 76.0073 | 139 | 10 | 126 | 5 | 4 | 80.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.0000 | 82.8947 | 98.4375 | 90.7581 | 126 | 26 | 126 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_siren | homalt | 98.0545 | 96.9231 | 99.2126 | 81.6739 | 126 | 4 | 126 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | * | 68.3802 | 65.4450 | 71.5909 | 94.3207 | 125 | 66 | 126 | 50 | 32 | 64.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2126 | 99.2126 | 99.2126 | 79.4830 | 126 | 1 | 126 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.7368 | 99.2126 | 90.6475 | 53.5117 | 126 | 1 | 126 | 13 | 12 | 92.3077 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | * | 93.4963 | 92.9688 | 94.0299 | 88.4383 | 119 | 9 | 126 | 8 | 4 | 50.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | homalt | 83.4646 | 71.6216 | 100.0000 | 91.9283 | 106 | 42 | 126 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 17.8468 | 9.9840 | 84.0000 | 62.9630 | 125 | 1127 | 126 | 24 | 19 | 79.1667 | |
| ghariani-varprowl | INDEL | D6_15 | segdup | * | 69.3267 | 66.4921 | 72.4138 | 94.6180 | 127 | 64 | 126 | 48 | 46 | 95.8333 | |
| gduggal-snapplat | INDEL | I1_5 | func_cds | * | 72.3894 | 69.4444 | 75.5952 | 55.4377 | 125 | 55 | 127 | 41 | 1 | 2.4390 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 22.7901 | 26.5957 | 19.9372 | 79.3316 | 125 | 345 | 127 | 510 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 31.6644 | 21.5926 | 59.3458 | 76.4835 | 141 | 512 | 127 | 87 | 36 | 41.3793 | |
| gduggal-snapvard | INDEL | D1_5 | func_cds | het | 87.2852 | 100.0000 | 77.4390 | 47.4359 | 85 | 0 | 127 | 37 | 33 | 89.1892 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | homalt | 97.3180 | 97.6923 | 96.9466 | 82.5333 | 127 | 3 | 127 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.0148 | 90.6040 | 97.6923 | 66.7519 | 135 | 14 | 127 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.8737 | 70.8571 | 96.9466 | 64.3052 | 124 | 51 | 127 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.3491 | 89.2617 | 89.4366 | 73.6549 | 133 | 16 | 127 | 15 | 9 | 60.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 91.0394 | 84.1060 | 99.2188 | 46.4435 | 127 | 24 | 127 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.8330 | 85.0000 | 84.6667 | 87.5519 | 136 | 24 | 127 | 23 | 23 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.7614 | 75.7576 | 79.8742 | 91.5962 | 125 | 40 | 127 | 32 | 21 | 65.6250 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.1311 | 96.9466 | 93.3824 | 90.3546 | 127 | 4 | 127 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0796 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.5069 | 93.9394 | 99.2188 | 80.8096 | 124 | 8 | 127 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | homalt | 20.9157 | 83.3333 | 11.9586 | 45.5385 | 20 | 4 | 127 | 935 | 669 | 71.5508 | |
| anovak-vg | INDEL | I16_PLUS | HG002compoundhet | * | 11.6860 | 7.0929 | 33.1593 | 41.3476 | 152 | 1991 | 127 | 256 | 126 | 49.2188 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.1975 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 75.2837 | 62.1359 | 95.4887 | 76.4184 | 128 | 78 | 127 | 6 | 4 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 84.9584 | 74.7191 | 98.4496 | 67.6692 | 133 | 45 | 127 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 81.5562 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.8491 | 96.9466 | 94.7761 | 92.5431 | 127 | 4 | 127 | 7 | 2 | 28.5714 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 84.2832 | 73.2558 | 99.2188 | 72.2343 | 126 | 46 | 127 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 76.2347 | 73.3333 | 79.3750 | 87.3317 | 121 | 44 | 127 | 33 | 10 | 30.3030 | |
| ckim-vqsr | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0994 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4149 | 94.6309 | 96.2121 | 77.5128 | 141 | 8 | 127 | 5 | 3 | 60.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.8491 | 96.9466 | 94.7761 | 90.6750 | 127 | 4 | 127 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.1388 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.5368 | 94.6970 | 98.4496 | 79.6850 | 125 | 7 | 127 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0994 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4149 | 94.6309 | 96.2121 | 77.5128 | 141 | 8 | 127 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 94.0741 | 96.9466 | 91.3669 | 92.3416 | 127 | 4 | 127 | 12 | 2 | 16.6667 | |
| ckim-dragen | INDEL | D6_15 | map_siren | homalt | 97.6923 | 97.6923 | 97.6923 | 86.7482 | 127 | 3 | 127 | 3 | 2 | 66.6667 | |