PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55101-55150 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 80.6667 | 95.5264 | 0 | 0 | 121 | 29 | 2 | 6.8966 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 93.0589 | 97.5410 | 88.9706 | 95.0292 | 119 | 3 | 121 | 15 | 1 | 6.6667 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | * | 95.6522 | 94.5312 | 96.8000 | 91.8936 | 121 | 7 | 121 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 94.5312 | 99.1803 | 90.2985 | 86.3821 | 121 | 1 | 121 | 13 | 11 | 84.6154 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 87.2444 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.5025 | 119 | 11 | 121 | 0 | 0 | ||
| ckim-gatk | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.4622 | 119 | 11 | 121 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 89.6296 | 100.0000 | 81.2081 | 97.1866 | 121 | 0 | 121 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0317 | 96.0317 | 96.0317 | 92.9688 | 121 | 5 | 121 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | * | segdup | hetalt | 96.4143 | 93.0769 | 100.0000 | 95.1464 | 121 | 9 | 121 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 97.1888 | 95.2756 | 99.1803 | 49.7942 | 121 | 6 | 121 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | het | 96.4143 | 96.0317 | 96.8000 | 86.3983 | 121 | 5 | 121 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 84.9771 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | het | 97.5806 | 99.1803 | 96.0317 | 94.7522 | 121 | 1 | 121 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.9757 | 96.0317 | 100.0000 | 89.1577 | 121 | 5 | 121 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5885 | 99.1803 | 100.0000 | 69.3671 | 121 | 1 | 121 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.1888 | 94.5312 | 100.0000 | 88.6704 | 121 | 7 | 121 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5885 | 99.1803 | 100.0000 | 70.1235 | 121 | 1 | 121 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m2_e0 | het | 95.6522 | 100.0000 | 91.6667 | 95.7378 | 121 | 0 | 121 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.1888 | 94.5312 | 100.0000 | 90.5910 | 121 | 7 | 121 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 92.0152 | 94.5312 | 89.6296 | 92.3164 | 121 | 7 | 121 | 14 | 2 | 14.2857 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.0769 | 99.1803 | 87.6812 | 86.5889 | 121 | 1 | 121 | 17 | 15 | 88.2353 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5885 | 99.1803 | 100.0000 | 71.7290 | 121 | 1 | 121 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.6000 | 95.3125 | 100.0000 | 89.3263 | 122 | 6 | 122 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.4427 | 100.0000 | 93.1298 | 85.5088 | 122 | 0 | 122 | 9 | 9 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.1429 | 56.4246 | 100.0000 | 29.0698 | 101 | 78 | 122 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.4427 | 100.0000 | 93.1298 | 86.0341 | 122 | 0 | 122 | 9 | 9 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.4427 | 96.0630 | 96.8254 | 78.2007 | 122 | 5 | 122 | 4 | 3 | 75.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 89.7059 | 96.8254 | 83.5616 | 91.2365 | 122 | 4 | 122 | 24 | 3 | 12.5000 | |
| hfeng-pmm3 | INDEL | * | segdup | hetalt | 96.0000 | 92.3077 | 100.0000 | 94.6374 | 120 | 10 | 122 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m2_e1 | het | 95.6863 | 100.0000 | 91.7293 | 95.8044 | 122 | 0 | 122 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.0630 | 100.0000 | 92.4242 | 86.0759 | 122 | 0 | 122 | 10 | 10 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 79.4104 | 79.0850 | 79.7386 | 67.5159 | 121 | 32 | 122 | 31 | 27 | 87.0968 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.9592 | 96.0000 | 100.0000 | 26.9461 | 120 | 5 | 122 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l100_m1_e0 | het | 94.9416 | 96.8254 | 93.1298 | 92.1557 | 122 | 4 | 122 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 72.3982 | 122 | 0 | 122 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.0630 | 100.0000 | 92.4242 | 87.5000 | 122 | 0 | 122 | 10 | 10 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 71.9540 | 122 | 0 | 122 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 94.8678 | 90.9091 | 99.1870 | 87.3846 | 120 | 12 | 122 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | homalt | 69.5157 | 53.5088 | 99.1870 | 82.9167 | 122 | 106 | 122 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.2135 | 67.4157 | 93.1298 | 72.7651 | 120 | 58 | 122 | 9 | 3 | 33.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.6348 | 77.0701 | 93.8462 | 62.2093 | 121 | 36 | 122 | 8 | 7 | 87.5000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | * | 94.4016 | 91.4062 | 97.6000 | 88.7691 | 117 | 11 | 122 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 75.6619 | 66.8539 | 87.1429 | 65.7702 | 119 | 59 | 122 | 18 | 18 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 82.0991 | 93.7008 | 73.0539 | 75.4412 | 119 | 8 | 122 | 45 | 44 | 97.7778 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 55.8708 | 55.0239 | 56.7442 | 69.7183 | 115 | 94 | 122 | 93 | 53 | 56.9892 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 1.7852 | 0.9174 | 32.9730 | 66.4247 | 4 | 432 | 122 | 248 | 94 | 37.9032 | |
| gduggal-snapvard | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 45.1852 | 95.1587 | 0 | 0 | 122 | 148 | 16 | 10.8108 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | homalt | 81.8840 | 70.1220 | 98.3871 | 94.7657 | 115 | 49 | 122 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | hetalt | 94.8678 | 90.9091 | 99.1870 | 86.1953 | 120 | 12 | 122 | 1 | 0 | 0.0000 | |