PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55051-55100 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 90.4610 | 120 | 6 | 120 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1736 | 98.3607 | 100.0000 | 70.2970 | 120 | 2 | 120 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 88.4837 | 120 | 6 | 120 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.8617 | 94.4882 | 95.2381 | 52.2727 | 120 | 7 | 120 | 6 | 5 | 83.3333 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 86.3309 | 98.3607 | 76.9231 | 97.0115 | 120 | 2 | 120 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 92.6641 | 95.2381 | 90.2256 | 92.2449 | 120 | 6 | 120 | 13 | 1 | 7.6923 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | het | 97.5610 | 99.1736 | 96.0000 | 94.6831 | 120 | 1 | 120 | 5 | 1 | 20.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 91.7278 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5885 | 99.1803 | 100.0000 | 62.8483 | 121 | 1 | 120 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 28.5347 | 18.3183 | 64.5161 | 91.0058 | 122 | 544 | 120 | 66 | 37 | 56.0606 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 28.5347 | 18.3183 | 64.5161 | 91.0058 | 122 | 544 | 120 | 66 | 37 | 56.0606 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 50.0650 | 35.5685 | 84.5070 | 87.6843 | 122 | 221 | 120 | 22 | 19 | 86.3636 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.1193 | 94.4000 | 100.0000 | 27.2727 | 118 | 7 | 120 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m2_e1 | hetalt | 94.4000 | 89.3939 | 100.0000 | 86.3481 | 118 | 14 | 120 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 93.0049 | 97.5207 | 88.8889 | 94.9457 | 118 | 3 | 120 | 15 | 1 | 6.6667 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | het | 80.6053 | 69.4656 | 96.0000 | 76.1905 | 91 | 40 | 120 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 38.2166 | 24.5902 | 85.7143 | 80.9783 | 120 | 368 | 120 | 20 | 20 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 33.4604 | 24.1319 | 54.5455 | 71.7587 | 139 | 437 | 120 | 100 | 1 | 1.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 64.8045 | 74.3750 | 57.4163 | 84.4610 | 119 | 41 | 120 | 89 | 86 | 96.6292 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 40.3265 | 76.3636 | 27.3973 | 91.1318 | 126 | 39 | 120 | 318 | 10 | 3.1447 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | het | 79.7221 | 68.1481 | 96.0317 | 76.1815 | 92 | 43 | 121 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.2393 | 84.6154 | 8.3737 | 81.4696 | 121 | 22 | 121 | 1324 | 15 | 1.1329 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | hetalt | 94.8207 | 90.1515 | 100.0000 | 87.7654 | 119 | 13 | 121 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 70.0566 | 57.5000 | 89.6296 | 82.8897 | 115 | 85 | 121 | 14 | 5 | 35.7143 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 97.1888 | 96.0317 | 98.3740 | 91.4226 | 121 | 5 | 121 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e0 | * | 97.1888 | 96.0317 | 98.3740 | 91.3136 | 121 | 5 | 121 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.5410 | 95.2000 | 100.0000 | 29.2398 | 119 | 6 | 121 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9774 | 95.2756 | 87.0504 | 53.0405 | 121 | 6 | 121 | 18 | 15 | 83.3333 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | het | 96.8000 | 100.0000 | 93.7984 | 95.8694 | 121 | 0 | 121 | 8 | 1 | 12.5000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.8881 | 14.3987 | 91.6667 | 67.0000 | 91 | 541 | 121 | 11 | 11 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 79.0807 | 98.3607 | 66.1202 | 63.2530 | 120 | 2 | 121 | 62 | 56 | 90.3226 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 65.2610 | 83.5526 | 53.5398 | 93.1390 | 127 | 25 | 121 | 105 | 14 | 13.3333 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | * | 94.7418 | 92.0635 | 97.5806 | 88.6343 | 116 | 10 | 121 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1888 | 99.1803 | 95.2756 | 95.1729 | 121 | 1 | 121 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5885 | 99.1803 | 100.0000 | 67.9894 | 121 | 1 | 121 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | * | 92.1763 | 86.7133 | 98.3740 | 86.2876 | 124 | 19 | 121 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.5017 | 79.3750 | 100.0000 | 77.5510 | 127 | 33 | 121 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4506 | 90.1515 | 99.1803 | 77.1107 | 119 | 13 | 121 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 92.0152 | 99.1803 | 85.8156 | 97.4396 | 121 | 1 | 121 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.8000 | 96.0317 | 97.5806 | 92.9785 | 121 | 5 | 121 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5885 | 99.1803 | 100.0000 | 71.9258 | 121 | 1 | 121 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 96.4143 | 94.5312 | 98.3740 | 91.7616 | 121 | 7 | 121 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.1888 | 97.5806 | 96.8000 | 90.9157 | 121 | 3 | 121 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e1 | * | 95.6522 | 94.5312 | 96.8000 | 93.1769 | 121 | 7 | 121 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 87.2444 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.5410 | 95.2000 | 100.0000 | 30.0578 | 119 | 6 | 121 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 97.5806 | 99.1803 | 96.0317 | 96.3415 | 121 | 1 | 121 | 5 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.4622 | 119 | 11 | 121 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.1325 | 95.2756 | 69.1429 | 50.8427 | 121 | 6 | 121 | 54 | 40 | 74.0741 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | * | 84.5587 | 83.9161 | 85.2113 | 88.7658 | 120 | 23 | 121 | 21 | 9 | 42.8571 | |