PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54951-55000 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3265 | 95.1613 | 97.5207 | 90.8055 | 118 | 6 | 118 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.6942 | 93.6000 | 100.0000 | 27.1605 | 117 | 8 | 118 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | het | 93.6508 | 96.7213 | 90.7692 | 93.7137 | 118 | 4 | 118 | 12 | 1 | 8.3333 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | * | 73.1479 | 91.0256 | 61.1399 | 97.2779 | 71 | 7 | 118 | 75 | 15 | 20.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.6942 | 93.6000 | 100.0000 | 28.9157 | 117 | 8 | 118 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | het | 84.8921 | 96.7213 | 75.6410 | 96.9838 | 118 | 4 | 118 | 38 | 3 | 7.8947 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | het | 82.8019 | 79.7203 | 86.1314 | 81.4363 | 114 | 29 | 118 | 19 | 17 | 89.4737 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.6000 | 95.3125 | 100.0000 | 86.1340 | 122 | 6 | 118 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | * | 92.0843 | 91.2698 | 92.9134 | 89.3990 | 115 | 11 | 118 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.7213 | 96.7213 | 96.7213 | 67.4667 | 118 | 4 | 118 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e1 | hetalt | 93.5484 | 87.8788 | 100.0000 | 84.6354 | 116 | 16 | 118 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 81.1020 | 68.6047 | 99.1667 | 72.0280 | 118 | 54 | 119 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | * | 91.4293 | 90.6250 | 92.2481 | 89.5037 | 116 | 12 | 119 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | func_cds | homalt | 99.5816 | 100.0000 | 99.1667 | 24.5283 | 119 | 0 | 119 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.6835 | 119 | 0 | 119 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1736 | 98.3607 | 100.0000 | 64.2643 | 120 | 2 | 119 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5858 | 119 | 0 | 119 | 0 | 0 | ||
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.2688 | 72.0280 | 54.8387 | 90.2559 | 103 | 40 | 119 | 98 | 35 | 35.7143 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 94.8207 | 98.3471 | 91.5385 | 95.9577 | 119 | 2 | 119 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.4094 | 119 | 0 | 119 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 61.2378 | 120 | 2 | 119 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.4094 | 119 | 0 | 119 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 59.9327 | 120 | 2 | 119 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 51.7864 | 37.7083 | 82.6389 | 69.0323 | 181 | 299 | 119 | 25 | 25 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.0875 | 71.7742 | 80.9524 | 99.8808 | 89 | 35 | 119 | 28 | 20 | 71.4286 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | het | 79.3333 | 98.3471 | 66.4804 | 96.1331 | 119 | 2 | 119 | 60 | 4 | 6.6667 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.1348 | 47.7733 | 97.5410 | 89.6698 | 118 | 129 | 119 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 79.3333 | 66.8539 | 97.5410 | 81.8452 | 119 | 59 | 119 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 73.1615 | 86.6667 | 63.2979 | 89.1767 | 143 | 22 | 119 | 69 | 11 | 15.9420 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 56.8463 | 56.2189 | 57.4879 | 72.4734 | 113 | 88 | 119 | 88 | 85 | 96.5909 | |
| rpoplin-dv42 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.6092 | 119 | 0 | 119 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.5410 | 97.5410 | 97.5410 | 68.6375 | 119 | 3 | 119 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | * | 96.7480 | 94.4444 | 99.1667 | 87.9154 | 119 | 7 | 119 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.1667 | 119 | 0 | 119 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7552 | 97.5410 | 100.0000 | 57.1942 | 119 | 3 | 119 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.4094 | 119 | 0 | 119 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 61.2378 | 120 | 2 | 119 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | * | 92.4953 | 90.6250 | 94.4444 | 89.0720 | 116 | 12 | 119 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.1667 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3563 | 95.9677 | 96.7480 | 90.6535 | 119 | 5 | 119 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 93.7008 | 92.4584 | 0 | 0 | 119 | 8 | 7 | 87.5000 | |
| ckim-vqsr | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 63.0435 | 120 | 2 | 119 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 49.9618 | 35.4839 | 84.3972 | 87.4219 | 121 | 220 | 119 | 22 | 19 | 86.3636 | |
| ciseli-custom | INDEL | I6_15 | HG002compoundhet | het | 17.3297 | 18.2692 | 16.4820 | 51.6410 | 38 | 170 | 119 | 603 | 564 | 93.5323 | |
| ckim-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 63.0435 | 120 | 2 | 119 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3563 | 95.9677 | 96.7480 | 90.6535 | 119 | 5 | 119 | 4 | 2 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.1667 | 119 | 0 | 119 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | het | 81.8995 | 71.4286 | 95.9677 | 75.3968 | 90 | 36 | 119 | 5 | 4 | 80.0000 | |