PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54851-54900 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 68.8645 | 52.5140 | 100.0000 | 28.5714 | 94 | 85 | 115 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 76.1616 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 92.3109 | 86.3636 | 99.1379 | 88.0903 | 114 | 18 | 115 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.8723 | 99.1379 | 96.6387 | 95.1744 | 115 | 1 | 115 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e1 | het | 96.6387 | 94.2623 | 99.1379 | 94.0604 | 115 | 7 | 115 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.6502 | 90.5512 | 99.1379 | 77.1203 | 115 | 12 | 115 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 70.2899 | 54.1899 | 100.0000 | 31.7647 | 97 | 82 | 116 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4733 | 93.5484 | 97.4790 | 90.8672 | 116 | 8 | 116 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D16_PLUS | HG002compoundhet | het | 48.4816 | 76.0494 | 35.5828 | 39.9632 | 308 | 97 | 116 | 210 | 182 | 86.6667 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.1053 | 94.3548 | 95.8678 | 99.9213 | 117 | 7 | 116 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 95.0068 | 91.2000 | 99.1453 | 87.6190 | 114 | 11 | 116 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.4968 | 94.3548 | 96.6667 | 99.9204 | 117 | 7 | 116 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | hetalt | 92.6829 | 86.3636 | 100.0000 | 87.5536 | 114 | 18 | 116 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0711 | 95.0820 | 99.1453 | 67.2269 | 116 | 6 | 116 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.0711 | 95.0820 | 99.1453 | 62.8571 | 116 | 6 | 116 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 51.2934 | 59.7015 | 44.9612 | 67.1338 | 120 | 81 | 116 | 142 | 139 | 97.8873 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 53.6328 | 46.6667 | 63.0435 | 33.0909 | 21 | 24 | 116 | 68 | 67 | 98.5294 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.4366 | 54.9763 | 90.6250 | 82.2960 | 116 | 95 | 116 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 38.0952 | 23.6253 | 98.3051 | 64.2424 | 116 | 375 | 116 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.6771 | 64.8494 | 100.0000 | 41.7085 | 452 | 245 | 116 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.0515 | 92.7419 | 97.4790 | 91.0526 | 115 | 9 | 116 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.4968 | 94.3548 | 96.6667 | 99.9192 | 117 | 7 | 116 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e0 | hetalt | 95.0068 | 91.2000 | 99.1453 | 86.4111 | 114 | 11 | 116 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 93.9271 | 90.6250 | 97.4790 | 92.6407 | 116 | 12 | 116 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.0406 | 21.9331 | 42.9630 | 60.8128 | 59 | 210 | 116 | 154 | 129 | 83.7662 | |
| astatham-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 95.3975 | 91.2000 | 100.0000 | 87.4865 | 114 | 11 | 116 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | het | 75.7043 | 77.0992 | 74.3590 | 85.9586 | 101 | 30 | 116 | 40 | 23 | 57.5000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.8333 | 92.0000 | 100.0000 | 35.1955 | 115 | 10 | 116 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 99.1453 | 95.9585 | 0 | 0 | 116 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9079 | 95.9016 | 100.0000 | 58.5714 | 117 | 5 | 116 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | homalt | 99.1453 | 100.0000 | 98.3051 | 94.6942 | 116 | 0 | 116 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 86.3208 | 120 | 6 | 116 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | het | 97.4790 | 95.8678 | 99.1453 | 95.3828 | 116 | 5 | 116 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2174 | 92.0732 | 84.6715 | 84.6413 | 151 | 13 | 116 | 21 | 19 | 90.4762 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | het | 95.8678 | 95.0820 | 96.6667 | 95.1515 | 116 | 6 | 116 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 78.8266 | 91.1111 | 69.4611 | 67.7606 | 41 | 4 | 116 | 51 | 30 | 58.8235 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | het | 96.6102 | 93.4426 | 100.0000 | 90.3654 | 114 | 8 | 116 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3223 | 99.1803 | 97.4790 | 53.1496 | 121 | 1 | 116 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 92.6829 | 86.3636 | 100.0000 | 87.5536 | 114 | 18 | 116 | 0 | 0 | ||
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.2348 | 75.6579 | 15.8687 | 80.7530 | 115 | 37 | 116 | 615 | 18 | 2.9268 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 93.7322 | 93.1624 | 94.3089 | 88.0234 | 109 | 8 | 116 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 85.2572 | 77.2727 | 95.0820 | 73.0088 | 102 | 30 | 116 | 6 | 4 | 66.6667 | |
| ckim-isaac | INDEL | * | map_l250_m2_e0 | het | 69.7358 | 54.2857 | 97.4790 | 97.5555 | 114 | 96 | 116 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m2_e1 | het | 69.5232 | 54.0284 | 97.4790 | 97.6119 | 114 | 97 | 116 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | HG002compoundhet | * | 6.2397 | 5.0406 | 8.1875 | 34.9864 | 118 | 2223 | 117 | 1312 | 1251 | 95.3506 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | het | 94.7466 | 97.5207 | 92.1260 | 96.0730 | 118 | 3 | 117 | 10 | 1 | 10.0000 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 94.6259 | 91.2000 | 98.3193 | 88.0762 | 114 | 11 | 117 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.7563 | 95.1613 | 94.3548 | 99.9176 | 118 | 6 | 117 | 7 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | het | 97.0954 | 96.6942 | 97.5000 | 95.0556 | 117 | 4 | 117 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | homalt | 99.1525 | 98.3193 | 100.0000 | 30.3571 | 117 | 2 | 117 | 0 | 0 | ||