PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54751-54800 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.9227 | 113 | 3 | 113 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.2449 | 88.9764 | 95.7627 | 76.5408 | 113 | 14 | 113 | 5 | 4 | 80.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | hetalt | 94.9153 | 90.3226 | 100.0000 | 87.1298 | 112 | 12 | 113 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.8920 | 54.0284 | 69.7531 | 54.6218 | 114 | 97 | 113 | 49 | 49 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | func_cds | homalt | 96.1113 | 93.2773 | 99.1228 | 19.1489 | 111 | 8 | 113 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 13.3646 | 83.0645 | 7.2669 | 75.3956 | 103 | 21 | 113 | 1442 | 13 | 0.9015 | |
| ghariani-varprowl | INDEL | I1_5 | func_cds | homalt | 97.0213 | 95.7983 | 98.2759 | 29.2683 | 114 | 5 | 114 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 50.2079 | 86.2903 | 35.4037 | 86.0546 | 107 | 17 | 114 | 208 | 3 | 1.4423 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 5.1744 | 2.8363 | 29.4574 | 72.6502 | 101 | 3460 | 114 | 273 | 176 | 64.4689 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 4.7196 | 2.6063 | 24.9453 | 76.2474 | 106 | 3961 | 114 | 343 | 228 | 66.4723 | |
| gduggal-snapvard | INDEL | D6_15 | segdup | * | 67.8956 | 65.9686 | 69.9387 | 92.8194 | 126 | 65 | 114 | 49 | 38 | 77.5510 | |
| gduggal-snapvard | INDEL | I6_15 | segdup | * | 60.2107 | 55.4286 | 65.8960 | 90.9708 | 97 | 78 | 114 | 59 | 50 | 84.7458 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 29.2460 | 17.8797 | 80.2817 | 70.2306 | 113 | 519 | 114 | 28 | 24 | 85.7143 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | homalt | 98.7013 | 98.2759 | 99.1304 | 95.7549 | 114 | 2 | 114 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e0 | het | 90.1186 | 94.2149 | 86.3636 | 97.4995 | 114 | 7 | 114 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 86.0744 | 114 | 0 | 114 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | HG002complexvar | homalt | 50.1099 | 36.8932 | 78.0822 | 66.5138 | 114 | 195 | 114 | 32 | 13 | 40.6250 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 94.9615 | 91.1290 | 99.1304 | 86.7512 | 113 | 11 | 114 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 86.7946 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 69.9877 | 92.1053 | 56.4356 | 92.2038 | 140 | 12 | 114 | 88 | 4 | 4.5455 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | homalt | 97.8541 | 99.1304 | 96.6102 | 95.7812 | 114 | 1 | 114 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.7059 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.0000 | 93.4426 | 96.6102 | 64.0244 | 114 | 8 | 114 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 90.7398 | 88.1890 | 93.4426 | 69.3467 | 112 | 15 | 114 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.9497 | 87.9032 | 94.2149 | 86.1556 | 109 | 15 | 114 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 91.2000 | 95.3943 | 0 | 1 | 114 | 11 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 91.2000 | 95.3943 | 0 | 1 | 114 | 11 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 86.3636 | 95.4183 | 0 | 1 | 114 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 86.3636 | 95.4183 | 0 | 1 | 114 | 18 | 1 | 5.5556 | |
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2759 | 97.4359 | 99.1304 | 88.8781 | 114 | 3 | 114 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 83.9945 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | homalt | 97.4359 | 95.7983 | 99.1304 | 27.2152 | 114 | 5 | 114 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.9580 | 90.4000 | 100.0000 | 36.3128 | 113 | 12 | 114 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2759 | 97.4359 | 99.1304 | 90.1457 | 114 | 3 | 114 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 85.5721 | 114 | 0 | 114 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.0816 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 83.1412 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.2530 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | homalt | 98.2759 | 98.2759 | 98.2759 | 94.8444 | 114 | 2 | 114 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6102 | 94.2149 | 99.1304 | 93.9633 | 114 | 7 | 114 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.2759 | 100.0000 | 96.6102 | 85.5037 | 114 | 0 | 114 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.5148 | 89.6000 | 100.0000 | 27.8481 | 112 | 13 | 114 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l250_m2_e0 | homalt | 97.8541 | 99.1304 | 96.6102 | 95.0956 | 114 | 1 | 114 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e1 | homalt | 97.8541 | 98.2759 | 97.4359 | 94.2927 | 114 | 2 | 114 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | * | map_l250_m2_e1 | homalt | 98.2759 | 98.2759 | 98.2759 | 95.7196 | 114 | 2 | 114 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.9712 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 35.3557 | 26.5193 | 53.0233 | 64.2263 | 96 | 266 | 114 | 101 | 94 | 93.0693 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 86.2391 | 93.9189 | 79.7203 | 77.1200 | 139 | 9 | 114 | 29 | 29 | 100.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.4976 | 75.5245 | 18.3280 | 86.4488 | 108 | 35 | 114 | 508 | 25 | 4.9213 | |