PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54701-54750 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.4647 | 88.7097 | 96.5517 | 99.9368 | 110 | 14 | 112 | 4 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | map_l150_m0_e0 | * | 58.6797 | 59.6591 | 57.7320 | 93.8118 | 105 | 71 | 112 | 82 | 51 | 62.1951 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5702 | 98.7805 | 92.5620 | 88.0435 | 162 | 2 | 112 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 95.1136 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.9153 | 100.0000 | 90.3226 | 63.9535 | 92 | 0 | 112 | 12 | 5 | 41.6667 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | hetalt | 93.6170 | 88.0000 | 100.0000 | 84.7826 | 110 | 15 | 112 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6496 | 93.4426 | 91.8699 | 73.4341 | 114 | 8 | 113 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.6188 | 83.4586 | 99.1228 | 73.6111 | 111 | 22 | 113 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 95.2243 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 78.9414 | 87.4016 | 71.9745 | 49.1909 | 111 | 16 | 113 | 44 | 39 | 88.6364 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | hetalt | 91.3580 | 84.0909 | 100.0000 | 91.6667 | 111 | 21 | 113 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 99.1228 | 86.3309 | 0 | 0 | 113 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.4155 | 93.4426 | 93.3884 | 74.3100 | 114 | 8 | 113 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6822 | 99.3902 | 90.4000 | 87.6847 | 163 | 1 | 113 | 12 | 10 | 83.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9957 | 96.5812 | 97.4138 | 92.7318 | 113 | 4 | 113 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 68.0723 | 52.0737 | 98.2609 | 59.9303 | 113 | 104 | 113 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.8705 | 14 | 0 | 113 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.2861 | 15 | 0 | 113 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 82.4818 | 94.3177 | 0 | 1 | 113 | 24 | 14 | 58.3333 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 23.7730 | 13.6201 | 93.3884 | 56.4748 | 38 | 241 | 113 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | * | 94.7920 | 92.3077 | 97.4138 | 88.3300 | 108 | 9 | 113 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.6900 | 99.1228 | 98.2609 | 83.5479 | 113 | 1 | 113 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.1211 | 89.6000 | 99.1228 | 23.4899 | 112 | 13 | 113 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 95.3036 | 113 | 3 | 113 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.0041 | 92.6230 | 93.3884 | 80.4207 | 113 | 9 | 113 | 8 | 8 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.6061 | 79.5775 | 92.6230 | 28.6550 | 113 | 29 | 113 | 9 | 9 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | homalt | 98.6900 | 98.2609 | 99.1228 | 95.6900 | 113 | 2 | 113 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.2609 | 99.1228 | 97.4138 | 85.6258 | 113 | 1 | 113 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 70.6250 | 95.1427 | 0 | 0 | 113 | 47 | 42 | 89.3617 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.7778 | 95.6793 | 0 | 0 | 113 | 67 | 49 | 73.1343 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 70.6250 | 95.1427 | 0 | 0 | 113 | 47 | 42 | 89.3617 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 75.8389 | 94.4299 | 0 | 0 | 113 | 36 | 34 | 94.4444 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.2609 | 99.1228 | 97.4138 | 85.9564 | 113 | 1 | 113 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 95.4277 | 113 | 3 | 113 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | * | 81.2950 | 79.0210 | 83.7037 | 88.3520 | 113 | 30 | 113 | 22 | 15 | 68.1818 | |
| ckim-gatk | INDEL | * | map_l250_m2_e0 | homalt | 98.2609 | 98.2609 | 98.2609 | 95.6538 | 113 | 2 | 113 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1702 | 96.5812 | 95.7627 | 92.6980 | 113 | 4 | 113 | 5 | 1 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 39.4599 | 40.5405 | 38.4354 | 56.0538 | 60 | 88 | 113 | 181 | 161 | 88.9503 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.2304 | 79.8387 | 86.9231 | 99.9093 | 99 | 25 | 113 | 17 | 5 | 29.4118 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.8546 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | homalt | 97.8355 | 98.2609 | 97.4138 | 95.2692 | 113 | 2 | 113 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 97.4138 | 96.5812 | 98.2609 | 91.2080 | 113 | 4 | 113 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | * | map_l250_m2_e0 | homalt | 97.8355 | 98.2609 | 97.4138 | 95.3432 | 113 | 2 | 113 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m1_e0 | * | 97.4138 | 96.5812 | 98.2609 | 91.0991 | 113 | 4 | 113 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | map_l100_m2_e0 | hetalt | 94.0678 | 88.8000 | 100.0000 | 88.2780 | 111 | 14 | 113 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | homalt | 98.2609 | 98.2609 | 98.2609 | 94.7513 | 113 | 2 | 113 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 94.6445 | 113 | 3 | 113 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2609 | 96.5812 | 100.0000 | 88.8008 | 113 | 4 | 113 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l100_m2_e0 | hetalt | 94.0678 | 88.8000 | 100.0000 | 87.3176 | 111 | 14 | 113 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m2_e0 | homalt | 97.8355 | 98.2609 | 97.4138 | 94.1971 | 113 | 2 | 113 | 3 | 2 | 66.6667 | |