PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54551-54600 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.5854 | 109 | 3 | 109 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 92.7660 | 96.4602 | 89.3443 | 97.3426 | 109 | 4 | 109 | 13 | 2 | 15.3846 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 92.7660 | 93.9655 | 91.5966 | 89.8029 | 109 | 7 | 109 | 10 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 92.7660 | 93.9655 | 91.5966 | 90.0502 | 109 | 7 | 109 | 10 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 92.7075 | 87.0968 | 99.0909 | 87.3418 | 108 | 16 | 109 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 85.1562 | 98.1982 | 75.1724 | 96.7963 | 109 | 2 | 109 | 36 | 1 | 2.7778 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.6425 | 97.3214 | 100.0000 | 75.1142 | 109 | 3 | 109 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | * | 96.4912 | 96.4912 | 96.4912 | 95.9474 | 110 | 4 | 110 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | het | 97.3451 | 99.0991 | 95.6522 | 94.4923 | 110 | 1 | 110 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | * | 96.9163 | 97.3451 | 96.4912 | 95.6472 | 110 | 3 | 110 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m2_e1 | * | 96.4912 | 96.4912 | 96.4912 | 96.4218 | 110 | 4 | 110 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 92.7695 | 87.2000 | 99.0991 | 88.2788 | 109 | 16 | 110 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.3413 | 97.5610 | 93.2203 | 88.0081 | 160 | 4 | 110 | 8 | 6 | 75.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 92.8270 | 96.4912 | 89.4309 | 97.3985 | 110 | 4 | 110 | 13 | 2 | 15.3846 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.7050 | 91.2162 | 60.4396 | 74.6165 | 135 | 13 | 110 | 72 | 71 | 98.6111 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | * | 96.9163 | 94.8276 | 99.0991 | 90.5932 | 110 | 6 | 110 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | * | 96.9163 | 94.8276 | 99.0991 | 90.8113 | 110 | 6 | 110 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | homalt | 96.4912 | 95.6522 | 97.3451 | 95.5424 | 110 | 5 | 110 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 97.3451 | 99.0991 | 95.6522 | 96.1513 | 110 | 1 | 110 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 96.4912 | 94.8276 | 98.2143 | 88.8000 | 110 | 6 | 110 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 96.4912 | 94.8276 | 98.2143 | 89.0838 | 110 | 6 | 110 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | hetalt | 93.5622 | 87.9032 | 100.0000 | 86.7947 | 109 | 15 | 110 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 11.0979 | 9.3988 | 13.5468 | 44.1924 | 111 | 1070 | 110 | 702 | 699 | 99.5726 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.5432 | 62.0000 | 100.0000 | 30.8176 | 217 | 133 | 110 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.5760 | 87.0968 | 68.3230 | 91.5441 | 108 | 16 | 110 | 51 | 5 | 9.8039 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.7794 | 88.9764 | 86.6142 | 67.2680 | 113 | 14 | 110 | 17 | 11 | 64.7059 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 81.9605 | 70.3226 | 98.2143 | 87.3303 | 109 | 46 | 110 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 85.4009 | 81.1159 | 90.1639 | 84.0314 | 189 | 44 | 110 | 12 | 12 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e0 | * | 96.4912 | 94.8276 | 98.2143 | 88.3817 | 110 | 6 | 110 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e1 | * | 96.4912 | 94.8276 | 98.2143 | 88.6525 | 110 | 6 | 110 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D1_5 | map_l125_m0_e0 | homalt | 82.9069 | 73.6486 | 94.8276 | 89.1386 | 109 | 39 | 110 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.2700 | 83.0508 | 70.5128 | 33.8983 | 49 | 10 | 110 | 46 | 45 | 97.8261 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.4382 | 90.1961 | 99.0991 | 85.5280 | 46 | 5 | 110 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.1689 | 87.7049 | 73.8255 | 66.0592 | 107 | 15 | 110 | 39 | 39 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 91.2863 | 99.0991 | 84.6154 | 97.2792 | 110 | 1 | 110 | 20 | 1 | 5.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 96.9163 | 99.0991 | 94.8276 | 94.9301 | 110 | 1 | 110 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 96.9163 | 96.4912 | 97.3451 | 95.8684 | 110 | 4 | 110 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 92.7039 | 86.4000 | 100.0000 | 88.0952 | 108 | 17 | 110 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 21.9561 | 12.5000 | 90.1639 | 55.1471 | 109 | 763 | 110 | 12 | 10 | 83.3333 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 64.7059 | 58.5106 | 72.3684 | 53.7994 | 110 | 78 | 110 | 42 | 42 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | hetalt | 92.8270 | 88.7097 | 97.3451 | 88.4694 | 110 | 14 | 110 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1110 | 99.1228 | 99.0991 | 78.8571 | 113 | 1 | 110 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 62.0349 | 81.0976 | 50.2283 | 77.7439 | 133 | 31 | 110 | 109 | 107 | 98.1651 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.3886 | 90.9836 | 85.9375 | 59.6215 | 111 | 11 | 110 | 18 | 18 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | * | 97.3451 | 97.3451 | 97.3451 | 96.1837 | 110 | 3 | 110 | 3 | 1 | 33.3333 | |
| qzeng-custom | SNP | tv | map_l250_m0_e0 | homalt | 71.8954 | 56.9948 | 97.3451 | 95.8148 | 110 | 83 | 110 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | hetalt | 93.5622 | 87.9032 | 100.0000 | 83.7758 | 109 | 15 | 110 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | homalt | 96.9163 | 94.8276 | 99.0991 | 94.6839 | 110 | 6 | 110 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | * | 91.9424 | 91.4530 | 92.4370 | 89.1225 | 107 | 10 | 110 | 9 | 5 | 55.5556 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 93.1984 | 97.2973 | 89.4309 | 94.7682 | 108 | 3 | 110 | 13 | 1 | 7.6923 | |