PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54501-54550 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 95.5752 | 94.7368 | 96.4286 | 96.5770 | 108 | 6 | 108 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 94.3723 | 98.1982 | 90.8333 | 95.7865 | 109 | 2 | 109 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.1765 | 109 | 3 | 109 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 96.0352 | 93.9655 | 98.1982 | 88.6735 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 96.0352 | 93.9655 | 98.1982 | 88.9442 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0352 | 95.6140 | 96.4602 | 96.4001 | 109 | 5 | 109 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 86.1499 | 109 | 3 | 109 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m1_e0 | homalt | 22.5907 | 12.7336 | 100.0000 | 97.9792 | 109 | 747 | 109 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.5378 | 41.1765 | 46.1864 | 59.0278 | 21 | 30 | 109 | 127 | 107 | 84.2520 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5642 | 91.2162 | 64.4970 | 75.8226 | 135 | 13 | 109 | 60 | 59 | 98.3333 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.2260 | 85.8491 | 97.3214 | 84.7411 | 91 | 15 | 109 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 55.0938 | 52.7363 | 57.6720 | 74.5283 | 106 | 95 | 109 | 80 | 46 | 57.5000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5777 | 97.5610 | 95.6140 | 88.7352 | 160 | 4 | 109 | 5 | 4 | 80.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m1_e0 | homalt | 99.0909 | 100.0000 | 98.1982 | 94.0290 | 109 | 0 | 109 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | het | 93.4498 | 87.7049 | 100.0000 | 89.6190 | 107 | 15 | 109 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 88.8034 | 80.4511 | 99.0909 | 74.7706 | 107 | 26 | 109 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 88.5843 | 82.5175 | 95.6140 | 92.1971 | 118 | 25 | 109 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 94.7826 | 93.9655 | 95.6140 | 90.6404 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 94.7826 | 93.9655 | 95.6140 | 90.8581 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 93.1034 | 87.0968 | 100.0000 | 87.1915 | 108 | 16 | 109 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 96.8889 | 96.4602 | 97.3214 | 95.7656 | 109 | 4 | 109 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.3214 | 95.6140 | 99.0909 | 79.4007 | 109 | 5 | 109 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | func_cds | homalt | 97.4138 | 94.9580 | 100.0000 | 22.6950 | 113 | 6 | 109 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | segdup | * | 68.6994 | 65.1429 | 72.6667 | 92.8605 | 114 | 61 | 109 | 41 | 40 | 97.5610 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e1 | homalt | 95.1965 | 93.9655 | 96.4602 | 96.9891 | 109 | 7 | 109 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | het | 78.1362 | 98.1982 | 64.8810 | 95.9104 | 109 | 2 | 109 | 59 | 4 | 6.7797 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.8889 | 95.6140 | 98.1982 | 81.0903 | 109 | 5 | 109 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 29.0805 | 20.8955 | 47.8070 | 73.7629 | 112 | 424 | 109 | 119 | 119 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 9.3373 | 5.7895 | 24.1150 | 76.0466 | 77 | 1253 | 109 | 343 | 228 | 66.4723 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e1 | * | 94.7826 | 95.6140 | 93.9655 | 97.5904 | 109 | 5 | 109 | 7 | 1 | 14.2857 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 66.2956 | 51.4563 | 93.1624 | 81.5748 | 106 | 100 | 109 | 8 | 4 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | homalt | 69.8718 | 54.2289 | 98.1982 | 86.5942 | 109 | 92 | 109 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | * | 95.1965 | 95.6140 | 94.7826 | 96.4691 | 109 | 5 | 109 | 6 | 1 | 16.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.4713 | 109 | 3 | 109 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | * | 92.6432 | 90.5983 | 94.7826 | 88.7586 | 106 | 11 | 109 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | homalt | 96.8889 | 94.7826 | 99.0909 | 94.5893 | 109 | 6 | 109 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 96.4602 | 95.9986 | 0 | 0 | 109 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 96.4602 | 89.1137 | 0 | 0 | 109 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m1_e0 | * | 97.8166 | 95.7265 | 100.0000 | 85.7516 | 112 | 5 | 109 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 92.1300 | 108 | 4 | 109 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.8992 | 93.9850 | 100.0000 | 87.6557 | 125 | 8 | 109 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 93.9655 | 96.4602 | 91.5966 | 97.4551 | 109 | 4 | 109 | 10 | 2 | 20.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4602 | 95.6140 | 97.3214 | 89.5814 | 109 | 5 | 109 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.8383 | 98.3607 | 97.3214 | 62.5418 | 60 | 1 | 109 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | * | 95.6140 | 95.6140 | 95.6140 | 96.1745 | 109 | 5 | 109 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.0223 | 95.7317 | 92.3729 | 85.3598 | 157 | 7 | 109 | 9 | 8 | 88.8889 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m2_e0 | * | 96.4602 | 96.4602 | 96.4602 | 96.3335 | 109 | 4 | 109 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.5429 | 109 | 3 | 109 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.8897 | 76.2238 | 90.8333 | 92.9947 | 109 | 34 | 109 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | * | 96.4602 | 96.4602 | 96.4602 | 95.8623 | 109 | 4 | 109 | 4 | 2 | 50.0000 | |