PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54251-54300 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5915 | 97.2222 | 100.0000 | 78.0851 | 105 | 3 | 103 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 59.1795 | 86.4865 | 44.9782 | 68.8011 | 128 | 20 | 103 | 126 | 124 | 98.4127 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1219 | 97.2222 | 99.0385 | 80.7050 | 105 | 3 | 103 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m0_e0 | het | 97.6122 | 96.2264 | 99.0385 | 93.5323 | 102 | 4 | 103 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | het | 97.6122 | 96.2264 | 99.0385 | 92.2906 | 102 | 4 | 103 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m1_e0 | * | 96.7136 | 97.1698 | 96.2617 | 95.2168 | 103 | 3 | 103 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0654 | 98.1481 | 100.0000 | 78.2881 | 106 | 2 | 104 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.6008 | 88.7218 | 99.0476 | 86.7591 | 118 | 15 | 104 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 85.2941 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2963 | 96.2963 | 96.2963 | 89.2430 | 104 | 4 | 104 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 85.5769 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7442 | 96.2963 | 97.1963 | 88.8889 | 104 | 4 | 104 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0654 | 98.1481 | 100.0000 | 79.5276 | 106 | 2 | 104 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | het | 96.2963 | 93.6937 | 99.0476 | 93.5858 | 104 | 7 | 104 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0654 | 98.1481 | 100.0000 | 79.0744 | 106 | 2 | 104 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.7690 | 74.1259 | 93.6937 | 90.8036 | 106 | 37 | 104 | 7 | 5 | 71.4286 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m1_e0 | het | 89.2704 | 93.6937 | 85.2459 | 97.3920 | 104 | 7 | 104 | 18 | 1 | 5.5556 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | homalt | 96.2963 | 95.4128 | 97.1963 | 95.1496 | 104 | 5 | 104 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 18.8114 | 10.6154 | 82.5397 | 71.8121 | 69 | 581 | 104 | 22 | 17 | 77.2727 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.8157 | 15 | 0 | 104 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e0 | * | 88.1641 | 92.9204 | 83.8710 | 96.6505 | 105 | 8 | 104 | 20 | 5 | 25.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | homalt | 95.8525 | 95.4128 | 96.2963 | 96.6728 | 104 | 5 | 104 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 30.4333 | 23.1388 | 44.4444 | 77.7989 | 115 | 382 | 104 | 130 | 109 | 83.8462 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 93.1123 | 88.5965 | 98.1132 | 89.0383 | 101 | 13 | 104 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e1 | * | 95.5234 | 92.2414 | 99.0476 | 82.1124 | 107 | 9 | 104 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 84.4214 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 75.3120 | 84.4262 | 67.9739 | 56.5341 | 103 | 19 | 104 | 49 | 49 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m0_e0 | het | 93.6937 | 98.1132 | 89.6552 | 95.7571 | 104 | 2 | 104 | 12 | 3 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | * | 91.6300 | 92.0354 | 91.2281 | 96.5990 | 104 | 9 | 104 | 10 | 3 | 30.0000 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | het | 88.9311 | 86.7470 | 91.2281 | 85.7500 | 72 | 11 | 104 | 10 | 10 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.7659 | 88.7218 | 97.1963 | 86.4213 | 118 | 15 | 104 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | * | 94.1176 | 91.2281 | 97.1963 | 82.9346 | 104 | 10 | 104 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | het | 98.0997 | 97.1698 | 99.0476 | 92.0814 | 103 | 3 | 104 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2735 | 89.6552 | 97.1963 | 85.5014 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2735 | 89.6552 | 97.1963 | 85.8466 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 90.9015 | 84.6774 | 98.1132 | 99.9441 | 105 | 19 | 104 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 98.1132 | 96.0015 | 0 | 0 | 104 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | * | 67.3567 | 71.3287 | 63.8037 | 92.7716 | 102 | 41 | 104 | 59 | 20 | 33.8983 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 67.5878 | 77.1812 | 60.1156 | 69.6491 | 115 | 34 | 104 | 69 | 68 | 98.5507 | |
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 88.1356 | 86.5143 | 0 | 0 | 104 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 86.6667 | 96.3066 | 0 | 0 | 104 | 16 | 6 | 37.5000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 86.6667 | 96.3066 | 0 | 0 | 104 | 16 | 6 | 37.5000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6744 | 97.2222 | 98.1308 | 89.4789 | 105 | 3 | 105 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5349 | 99.0741 | 100.0000 | 81.1151 | 107 | 1 | 105 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m1_e0 | het | 69.6080 | 54.2105 | 97.2222 | 97.4636 | 103 | 87 | 105 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l250_m1_e0 | het | 57.5615 | 54.7368 | 60.6936 | 97.5902 | 104 | 86 | 105 | 68 | 32 | 47.0588 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | homalt | 96.3303 | 96.3303 | 96.3303 | 94.4557 | 105 | 4 | 105 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e0 | * | 92.9204 | 92.9204 | 92.9204 | 96.3759 | 105 | 8 | 105 | 8 | 3 | 37.5000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.4406 | 92.0792 | 99.0566 | 93.2954 | 93 | 8 | 105 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | segdup | * | 68.0208 | 61.1429 | 76.6423 | 91.6157 | 107 | 68 | 105 | 32 | 32 | 100.0000 | |