PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54051-54100 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.8784 | 82.4324 | 70.2899 | 72.7811 | 122 | 26 | 97 | 41 | 41 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.5174 | 95.0980 | 97.9798 | 60.8696 | 97 | 5 | 97 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | * | 96.5517 | 95.1456 | 98.0000 | 87.8935 | 98 | 5 | 98 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5124 | 96.0784 | 98.9899 | 59.9190 | 98 | 4 | 98 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5124 | 96.0784 | 98.9899 | 59.2593 | 98 | 4 | 98 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 74.7423 | 99 | 9 | 98 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | * | 94.6860 | 92.4528 | 97.0297 | 95.6893 | 98 | 8 | 98 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e0 | * | 79.7632 | 78.5714 | 80.9917 | 92.2684 | 99 | 27 | 98 | 23 | 16 | 69.5652 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e1 | * | 78.8076 | 77.3438 | 80.3279 | 92.3845 | 99 | 29 | 98 | 24 | 17 | 70.8333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | * | 94.1888 | 91.5094 | 97.0297 | 93.4755 | 97 | 9 | 98 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.7799 | 90.7407 | 97.0297 | 86.3881 | 98 | 10 | 98 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.5960 | 84.9624 | 97.0297 | 85.4676 | 113 | 20 | 98 | 3 | 1 | 33.3333 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1456 | 96.0784 | 94.2308 | 92.3134 | 98 | 4 | 98 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_siren | homalt | 85.5895 | 75.3846 | 98.9899 | 77.7528 | 98 | 32 | 98 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m1_e0 | het | 92.7536 | 86.4865 | 100.0000 | 88.6179 | 96 | 15 | 98 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | het | 90.7407 | 92.4528 | 89.0909 | 90.5902 | 98 | 8 | 98 | 12 | 2 | 16.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 22.8209 | 19.0713 | 28.4058 | 74.7623 | 115 | 488 | 98 | 247 | 3 | 1.2146 | |
| ghariani-varprowl | INDEL | D6_15 | map_siren | homalt | 85.5895 | 75.3846 | 98.9899 | 78.1457 | 98 | 32 | 98 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 86.6039 | 84.2520 | 89.0909 | 56.0000 | 107 | 20 | 98 | 12 | 8 | 66.6667 | |
| qzeng-custom | INDEL | * | map_l250_m2_e1 | homalt | 73.4760 | 59.4828 | 96.0784 | 96.3480 | 69 | 47 | 98 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | het | 95.1456 | 92.4528 | 98.0000 | 84.0510 | 98 | 8 | 98 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 74.5771 | 61.3208 | 95.1456 | 97.1594 | 65 | 41 | 98 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | homalt | 67.8201 | 66.2162 | 69.5035 | 79.0490 | 98 | 50 | 98 | 43 | 39 | 90.6977 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m1_e0 | * | 92.4528 | 92.4528 | 92.4528 | 95.9634 | 98 | 8 | 98 | 8 | 3 | 37.5000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.1799 | 75.0000 | 15.8576 | 76.7407 | 93 | 31 | 98 | 520 | 4 | 0.7692 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | het | 94.7368 | 93.3962 | 96.1165 | 94.1344 | 99 | 7 | 99 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 51.1783 | 36.9565 | 83.1933 | 65.7061 | 153 | 261 | 99 | 20 | 20 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | homalt | 64.4951 | 47.5962 | 100.0000 | 91.0163 | 99 | 109 | 99 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.3170 | 80.6452 | 95.1923 | 99.9131 | 100 | 24 | 99 | 5 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 89.3443 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.7708 | 83.7838 | 56.8966 | 68.7050 | 124 | 24 | 99 | 75 | 75 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | * | 97.0588 | 96.1165 | 98.0198 | 86.6755 | 99 | 4 | 99 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 92.9577 | 93.3962 | 92.5234 | 94.8483 | 99 | 7 | 99 | 8 | 1 | 12.5000 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | homalt | 92.0930 | 86.0870 | 99.0000 | 95.9920 | 99 | 16 | 99 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 95.6145 | 92.4528 | 99.0000 | 93.7422 | 98 | 8 | 99 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.8389 | 91.6667 | 96.1165 | 90.2370 | 99 | 9 | 99 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.2241 | 93.9024 | 83.1933 | 72.9545 | 77 | 5 | 99 | 20 | 18 | 90.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4251 | 70.6294 | 96.1165 | 91.5574 | 101 | 42 | 99 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 93.3962 | 88.3929 | 99.0000 | 68.8474 | 99 | 13 | 99 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.1550 | 92.4528 | 98.0198 | 92.8923 | 98 | 8 | 99 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | * | 91.2442 | 93.3962 | 89.1892 | 97.0217 | 99 | 7 | 99 | 12 | 4 | 33.3333 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | homalt | 94.6075 | 90.5882 | 99.0000 | 88.8143 | 77 | 8 | 99 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | het | 79.3681 | 85.0000 | 74.4361 | 85.1064 | 51 | 9 | 99 | 34 | 20 | 58.8235 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 84.6884 | 81.9549 | 87.6106 | 84.2399 | 109 | 24 | 99 | 14 | 7 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 90.4324 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m0_e0 | het | 92.9577 | 93.3962 | 92.5234 | 96.0647 | 99 | 7 | 99 | 8 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6938 | 97.0874 | 94.3396 | 91.8147 | 100 | 3 | 100 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | hetalt | 46.6253 | 31.0606 | 93.4579 | 92.4542 | 41 | 91 | 100 | 7 | 5 | 71.4286 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.1050 | 83.6066 | 90.9091 | 64.1694 | 102 | 20 | 100 | 10 | 2 | 20.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 95.6938 | 94.3396 | 97.0874 | 96.3358 | 100 | 6 | 100 | 3 | 2 | 66.6667 | |