PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53901-53950 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 21.1864 | 93 | 4 | 93 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 23.1405 | 93 | 4 | 93 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 23.1405 | 93 | 4 | 93 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 22.5000 | 93 | 4 | 93 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 75.7180 | 93 | 6 | 93 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.3098 | 64.7887 | 76.8595 | 44.7489 | 92 | 50 | 93 | 28 | 26 | 92.8571 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.1358 | 70.1613 | 80.8696 | 87.6477 | 87 | 37 | 93 | 22 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | HG002complexvar | hetalt | 38.7208 | 24.7761 | 88.5714 | 62.2302 | 83 | 252 | 93 | 12 | 10 | 83.3333 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 24.3902 | 93 | 4 | 93 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 80.1724 | 75.0000 | 86.1111 | 99.9462 | 93 | 31 | 93 | 15 | 8 | 53.3333 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | hetalt | 47.0062 | 31.4516 | 93.0000 | 92.1198 | 39 | 85 | 93 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 94.8980 | 93.3514 | 0 | 0 | 93 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 62.3549 | 57.1429 | 68.6131 | 99.8675 | 12 | 9 | 94 | 43 | 39 | 90.6977 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 89.8828 | 86.1111 | 94.0000 | 83.4437 | 93 | 15 | 94 | 6 | 2 | 33.3333 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.0580 | 85.1852 | 81.0345 | 77.8626 | 115 | 20 | 94 | 22 | 21 | 95.4545 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.7778 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | hetalt | 96.9072 | 94.9495 | 98.9474 | 76.0101 | 94 | 5 | 94 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.4315 | 92.1569 | 98.9474 | 60.0840 | 94 | 8 | 94 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.9184 | 92.1569 | 100.0000 | 92.8299 | 94 | 8 | 94 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4103 | 93.0693 | 100.0000 | 93.4677 | 94 | 7 | 94 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | * | 94.5605 | 94.1748 | 94.9495 | 84.3106 | 97 | 6 | 94 | 5 | 1 | 20.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | * | 78.3333 | 74.6032 | 82.4561 | 90.1299 | 94 | 32 | 94 | 20 | 19 | 95.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | * | 77.3663 | 73.4375 | 81.7391 | 90.2294 | 94 | 34 | 94 | 21 | 20 | 95.2381 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 61.7886 | 92 | 0 | 94 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.7778 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 98.4293 | 96.9072 | 100.0000 | 20.3390 | 94 | 3 | 94 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 39.0246 | 30.7443 | 53.4091 | 73.8095 | 95 | 214 | 94 | 82 | 74 | 90.2439 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.0136 | 77.0115 | 85.4545 | 99.8819 | 67 | 20 | 94 | 16 | 4 | 25.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 19.2616 | 10.7547 | 92.1569 | 64.7059 | 57 | 473 | 94 | 8 | 7 | 87.5000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.0475 | 46.9799 | 83.1858 | 54.4355 | 70 | 79 | 94 | 19 | 19 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.0454 | 79.7297 | 69.1176 | 73.4893 | 118 | 30 | 94 | 42 | 42 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.4724 | 92.1569 | 96.9072 | 92.3682 | 94 | 8 | 94 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.5629 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |
| astatham-gatk | INDEL | D6_15 | map_siren | hetalt | 97.4093 | 94.9495 | 100.0000 | 75.7106 | 94 | 5 | 94 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_siren | hetalt | 96.9072 | 94.9495 | 98.9474 | 74.3243 | 94 | 5 | 94 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | map_l250_m1_e0 | homalt | 92.1569 | 86.2385 | 98.9474 | 95.6262 | 94 | 15 | 94 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 76.3819 | 93 | 6 | 94 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 87.8505 | 83.1858 | 93.0693 | 97.3379 | 94 | 19 | 94 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.9792 | 91.0891 | 94.9495 | 93.3557 | 92 | 9 | 94 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | * | 76.3127 | 73.8095 | 78.9916 | 88.9713 | 93 | 33 | 94 | 25 | 15 | 60.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m0_e0 | het | 28.2282 | 16.4336 | 100.0000 | 99.2644 | 94 | 478 | 94 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.0580 | 85.1852 | 81.0345 | 77.6062 | 115 | 20 | 94 | 22 | 21 | 95.4545 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 47.2362 | 89.5263 | 0 | 0 | 94 | 105 | 43 | 40.9524 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | * | 9.5470 | 5.2952 | 48.4536 | 72.9428 | 87 | 1556 | 94 | 100 | 53 | 53.0000 | |
| gduggal-snapvard | INDEL | D6_15 | segdup | het | 71.7253 | 78.2609 | 66.1972 | 93.2445 | 72 | 20 | 94 | 48 | 37 | 77.0833 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.6847 | 74.0157 | 98.9474 | 35.8108 | 94 | 33 | 94 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m0_e0 | * | 95.0386 | 94.1748 | 95.9184 | 83.9607 | 97 | 6 | 94 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 60.3376 | 92 | 0 | 94 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 80.5398 | 72.0721 | 91.2621 | 98.1252 | 80 | 31 | 94 | 9 | 8 | 88.8889 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 82.7942 | 81.6901 | 83.9286 | 92.8297 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |