PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53701-53750 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 39.6972 | 43.7037 | 36.3636 | 62.9969 | 59 | 76 | 88 | 154 | 95 | 61.6883 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | * | 82.6291 | 90.7216 | 75.8621 | 95.5021 | 88 | 9 | 88 | 28 | 5 | 17.8571 | |
| cchapple-custom | INDEL | I6_15 | map_siren | homalt | 97.7778 | 97.7778 | 97.7778 | 81.3278 | 88 | 2 | 88 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 23.8482 | 94.6807 | 0 | 1 | 88 | 281 | 73 | 25.9786 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4350 | 98.8764 | 100.0000 | 76.2803 | 88 | 1 | 88 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0693 | 68.8525 | 95.6522 | 51.5789 | 42 | 19 | 88 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.5379 | 70.8333 | 98.8764 | 33.5821 | 17 | 7 | 88 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | * | 88.3436 | 87.8049 | 88.8889 | 89.8462 | 72 | 10 | 88 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 12.5922 | 6.7449 | 94.6237 | 51.3089 | 23 | 318 | 88 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 72.7749 | 91.8182 | 60.2740 | 84.1649 | 101 | 9 | 88 | 58 | 16 | 27.5862 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.7778 | 100.0000 | 95.6522 | 89.5810 | 3 | 0 | 88 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.4409 | 83.9161 | 49.7175 | 92.3969 | 120 | 23 | 88 | 89 | 17 | 19.1011 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 54.2142 | 52.8090 | 55.6962 | 76.4881 | 94 | 84 | 88 | 70 | 43 | 61.4286 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | het | 77.5330 | 65.1852 | 95.6522 | 95.8633 | 88 | 47 | 88 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | segdup | het | 97.2376 | 95.6522 | 98.8764 | 94.8044 | 88 | 4 | 88 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | segdup | het | 97.7778 | 95.6522 | 100.0000 | 94.1216 | 88 | 4 | 88 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_siren | homalt | 97.7778 | 97.7778 | 97.7778 | 83.4254 | 88 | 2 | 88 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_siren | homalt | 96.1749 | 97.7778 | 94.6237 | 82.9044 | 88 | 2 | 88 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e0 | * | 60.0321 | 64.1509 | 56.4103 | 82.6087 | 34 | 19 | 88 | 68 | 53 | 77.9412 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.3401 | 90.7216 | 88.0000 | 95.2584 | 88 | 9 | 88 | 12 | 4 | 33.3333 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.3114 | 97.7528 | 98.8764 | 76.5789 | 87 | 2 | 88 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 58.1498 | 70.5882 | 49.4382 | 90.1657 | 72 | 30 | 88 | 90 | 30 | 33.3333 | |
| anovak-vg | INDEL | * | map_l250_m2_e1 | homalt | 72.6272 | 75.0000 | 70.4000 | 95.6911 | 87 | 29 | 88 | 37 | 34 | 91.8919 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 69.9850 | 66.9291 | 73.3333 | 68.5864 | 85 | 42 | 88 | 32 | 20 | 62.5000 | |
| bgallagher-sentieon | INDEL | D6_15 | segdup | het | 96.2162 | 96.7391 | 95.6989 | 95.1461 | 89 | 3 | 89 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.6164 | 89 | 0 | 89 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_siren | homalt | 96.7391 | 98.8889 | 94.6809 | 85.2201 | 89 | 1 | 89 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.6847 | 91.7526 | 83.9623 | 94.6973 | 89 | 8 | 89 | 17 | 4 | 23.5294 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.8152 | 89 | 0 | 89 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.1911 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 87.2549 | 83.9623 | 90.8163 | 95.3356 | 89 | 17 | 89 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 88.1188 | 83.9623 | 92.7083 | 97.0525 | 89 | 17 | 89 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.7391 | 96.7391 | 96.7391 | 70.4180 | 89 | 3 | 89 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.5297 | 98.3333 | 96.7391 | 95.1933 | 59 | 1 | 89 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | * | 88.0187 | 87.0588 | 89.0000 | 89.9598 | 74 | 11 | 89 | 11 | 11 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | * | 59.2100 | 61.5385 | 57.0513 | 92.6450 | 88 | 55 | 89 | 67 | 35 | 52.2388 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m1_e0 | * | 78.1730 | 76.9231 | 79.4643 | 92.1071 | 90 | 27 | 89 | 23 | 16 | 69.5652 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.8022 | 96.1813 | 0 | 0 | 89 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.4472 | 91.7526 | 87.2549 | 95.2909 | 89 | 8 | 89 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | het | 95.1872 | 96.7391 | 93.6842 | 96.4932 | 89 | 3 | 89 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.7143 | 89 | 1 | 89 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e1 | * | 90.3553 | 91.7526 | 89.0000 | 95.7301 | 89 | 8 | 89 | 11 | 4 | 36.3636 | |
| ckim-vqsr | INDEL | D6_15 | segdup | het | 96.7391 | 96.7391 | 96.7391 | 96.5939 | 89 | 3 | 89 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_siren | homalt | 98.3425 | 98.8889 | 97.8022 | 85.3462 | 89 | 1 | 89 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.6831 | 89 | 0 | 89 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.6703 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 63.0114 | 46.2366 | 98.8889 | 64.0000 | 86 | 100 | 89 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | segdup | hetalt | 80.1843 | 66.9231 | 100.0000 | 93.8999 | 87 | 43 | 89 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.3948 | 71.7742 | 81.6514 | 99.9459 | 89 | 35 | 89 | 20 | 12 | 60.0000 | |
| ckim-gatk | INDEL | I6_15 | map_siren | homalt | 98.3425 | 98.8889 | 97.8022 | 85.3462 | 89 | 1 | 89 | 2 | 1 | 50.0000 | |