PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53651-53700 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e0 | * | 86.3981 | 76.7241 | 98.8636 | 82.8460 | 89 | 27 | 87 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e1 | * | 86.3981 | 76.7241 | 98.8636 | 83.1740 | 89 | 27 | 87 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 94.5652 | 91.2130 | 0 | 0 | 87 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 94.5652 | 79.6460 | 0 | 0 | 87 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D6_15 | segdup | het | 77.0066 | 95.6522 | 64.4444 | 95.1837 | 88 | 4 | 87 | 48 | 48 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | het | 78.7330 | 66.4122 | 96.6667 | 95.8640 | 87 | 44 | 87 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.3227 | 56.8627 | 88.7755 | 86.4454 | 87 | 66 | 87 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 72.1992 | 56.8627 | 98.8636 | 64.0816 | 87 | 66 | 87 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0755 | 69.6000 | 100.0000 | 36.4964 | 87 | 38 | 87 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 9.0082 | 7.4513 | 11.3874 | 43.3234 | 88 | 1093 | 87 | 677 | 676 | 99.8523 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m1_e0 | * | 77.6786 | 74.3590 | 81.3084 | 89.7706 | 87 | 30 | 87 | 20 | 19 | 95.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8636 | 100.0000 | 97.7528 | 84.9916 | 87 | 0 | 87 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.9430 | 62.9630 | 92.5532 | 76.6169 | 85 | 50 | 87 | 7 | 6 | 85.7143 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4286 | 100.0000 | 98.8636 | 81.1159 | 87 | 0 | 87 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | segdup | het | 96.1326 | 94.5652 | 97.7528 | 94.0067 | 87 | 5 | 87 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 100.0000 | 100.0000 | 100.0000 | 81.4499 | 87 | 0 | 87 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 90.1554 | 89.6907 | 90.6250 | 93.3194 | 87 | 10 | 87 | 9 | 2 | 22.2222 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.2983 | 56.3218 | 77.6786 | 69.6477 | 49 | 38 | 87 | 25 | 15 | 60.0000 | |
| ghariani-varprowl | INDEL | D6_15 | segdup | het | 76.9912 | 94.5652 | 64.9254 | 95.2347 | 87 | 5 | 87 | 47 | 45 | 95.7447 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 46.0317 | 89.0815 | 0 | 0 | 87 | 102 | 40 | 39.2157 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.7528 | 100.0000 | 95.6044 | 84.1463 | 87 | 0 | 87 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.7528 | 100.0000 | 95.6044 | 85.2033 | 87 | 0 | 87 | 4 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | map_l250_m2_e0 | homalt | 72.3983 | 74.7826 | 70.1613 | 95.5950 | 86 | 29 | 87 | 37 | 34 | 91.8919 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | * | 75.8631 | 73.5043 | 78.3784 | 88.8554 | 86 | 31 | 87 | 24 | 15 | 62.5000 | |
| asubramanian-gatk | INDEL | D6_15 | segdup | het | 97.2067 | 94.5652 | 100.0000 | 96.0775 | 87 | 5 | 87 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.6330 | 82.7586 | 97.7528 | 84.0215 | 72 | 15 | 87 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3051 | 100.0000 | 96.6667 | 84.7973 | 87 | 0 | 87 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.7576 | 91.8605 | 100.0000 | 78.0303 | 79 | 7 | 87 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.6644 | 48.0447 | 98.8636 | 26.6667 | 86 | 93 | 87 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.2308 | 89.6907 | 88.7755 | 92.8467 | 87 | 10 | 87 | 11 | 4 | 36.3636 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4286 | 100.0000 | 98.8636 | 79.0974 | 87 | 0 | 87 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | homalt | 95.0820 | 96.6667 | 93.5484 | 80.3383 | 87 | 3 | 87 | 6 | 5 | 83.3333 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.7576 | 91.8605 | 100.0000 | 77.9747 | 79 | 7 | 87 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.0290 | 92.4528 | 97.7528 | 87.1573 | 98 | 8 | 87 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 53.2627 | 83.1081 | 39.1892 | 51.8438 | 123 | 25 | 87 | 135 | 134 | 99.2593 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 72.3074 | 65.1007 | 81.3084 | 71.2366 | 97 | 52 | 87 | 20 | 14 | 70.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3051 | 100.0000 | 96.6667 | 85.6688 | 87 | 0 | 87 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.7528 | 100.0000 | 95.6044 | 84.5238 | 87 | 0 | 87 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.1287 | 90.7216 | 83.8095 | 94.9324 | 88 | 9 | 88 | 17 | 4 | 23.5294 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.7339 | 69.2913 | 96.7033 | 44.5122 | 88 | 39 | 88 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 93.6170 | 95.2929 | 0 | 0 | 88 | 6 | 3 | 50.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4350 | 98.8764 | 100.0000 | 76.2803 | 88 | 1 | 88 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 83.2909 | 81.2500 | 85.4369 | 92.7821 | 52 | 12 | 88 | 15 | 2 | 13.3333 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.1351 | 100.0000 | 90.7216 | 63.3962 | 68 | 0 | 88 | 9 | 4 | 44.4444 | |
| jli-custom | INDEL | I6_15 | map_siren | homalt | 96.7033 | 97.7778 | 95.6522 | 81.6367 | 88 | 2 | 88 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.2326 | 82.2222 | 82.2430 | 78.7698 | 111 | 24 | 88 | 19 | 18 | 94.7368 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4350 | 98.8764 | 100.0000 | 76.3441 | 88 | 1 | 88 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8764 | 98.8764 | 98.8764 | 69.7279 | 88 | 1 | 88 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 23.8482 | 94.6807 | 0 | 1 | 88 | 281 | 73 | 25.9786 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 56.4570 | 44.2786 | 77.8761 | 77.2177 | 89 | 112 | 88 | 25 | 20 | 80.0000 | |