PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53551-53600 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | segdup | het | 89.9018 | 91.3043 | 88.5417 | 91.7241 | 84 | 8 | 85 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | ti | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 45.8599 | 85 | 0 | 85 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | * | 98.8372 | 100.0000 | 97.7011 | 47.9042 | 85 | 0 | 85 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_siren | homalt | 95.5056 | 94.4444 | 96.5909 | 86.3142 | 85 | 5 | 85 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.5715 | 13.2114 | 46.4481 | 71.1356 | 65 | 427 | 85 | 98 | 77 | 78.5714 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 90.4232 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 99.4083 | 98.8235 | 100.0000 | 57.0707 | 84 | 1 | 85 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 90.2935 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 90.7626 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 94.3499 | 95.3125 | 93.4066 | 88.7237 | 61 | 3 | 85 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 94.2808 | 94.1176 | 94.4444 | 90.3330 | 80 | 5 | 85 | 5 | 3 | 60.0000 | |
| cchapple-custom | SNP | ti | tech_badpromoters | * | 99.4152 | 100.0000 | 98.8372 | 43.4211 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | * | 96.5778 | 97.6744 | 95.5056 | 93.0031 | 84 | 2 | 85 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | func_cds | het | 96.5909 | 100.0000 | 93.4066 | 52.8497 | 85 | 0 | 85 | 6 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | * | 96.0323 | 97.6744 | 94.4444 | 91.6589 | 84 | 2 | 85 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_siren | * | 95.4928 | 97.6744 | 93.4066 | 92.6790 | 84 | 2 | 85 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 99.4083 | 98.8235 | 100.0000 | 57.0707 | 84 | 1 | 85 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l100_m1_e0 | hetalt | 82.7545 | 71.7742 | 97.7011 | 88.8031 | 89 | 35 | 85 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 90.7626 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.9227 | 92.3913 | 95.5056 | 68.1004 | 85 | 7 | 85 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | ti | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 46.5409 | 85 | 0 | 85 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | func_cds | het | 99.4152 | 100.0000 | 98.8372 | 38.5714 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 42.5676 | 85 | 0 | 85 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 87.8187 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.4755 | 89.6226 | 93.4066 | 86.1280 | 95 | 11 | 85 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9984 | 90.5660 | 97.7011 | 86.0577 | 96 | 10 | 85 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | tech_badpromoters | * | 98.2659 | 100.0000 | 96.5909 | 46.0123 | 85 | 0 | 85 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.2659 | 97.7011 | 98.8372 | 82.5911 | 85 | 2 | 85 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 89.0724 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.5210 | 90.5660 | 98.8372 | 86.7284 | 96 | 10 | 85 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 47.2393 | 85 | 0 | 86 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.0894 | 98.8506 | 93.4783 | 84.2466 | 86 | 1 | 86 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | func_cds | het | 95.0276 | 100.0000 | 90.5263 | 62.0000 | 85 | 0 | 86 | 9 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 44.1558 | 85 | 0 | 86 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | func_cds | het | 99.4220 | 100.0000 | 98.8506 | 43.8710 | 85 | 0 | 86 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | func_cds | het | 99.4220 | 100.0000 | 98.8506 | 36.0294 | 85 | 0 | 86 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | hetalt | 84.1295 | 75.8065 | 94.5055 | 88.4664 | 94 | 30 | 86 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | hetalt | 83.7547 | 75.2000 | 94.5055 | 89.4798 | 94 | 31 | 86 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | homalt | 96.6292 | 95.5556 | 97.7273 | 81.5514 | 86 | 4 | 86 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.1215 | 83.6910 | 100.0000 | 74.7801 | 195 | 38 | 86 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m1_e0 | homalt | 71.3120 | 56.8807 | 95.5556 | 96.3444 | 62 | 47 | 86 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 65.2356 | 95.9184 | 49.4253 | 67.9558 | 47 | 2 | 86 | 88 | 8 | 9.0909 | |
| qzeng-custom | INDEL | I6_15 | map_siren | homalt | 77.8370 | 87.7778 | 69.9187 | 73.1441 | 79 | 11 | 86 | 37 | 1 | 2.7027 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 83.7918 | 78.7037 | 89.5833 | 87.3850 | 85 | 23 | 86 | 10 | 6 | 60.0000 | |
| jmaeng-gatk | SNP | tv | map_l250_m0_e0 | homalt | 61.4286 | 44.5596 | 98.8506 | 96.4620 | 86 | 107 | 86 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4220 | 98.8506 | 100.0000 | 80.7606 | 86 | 1 | 86 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 90.5263 | 88.6598 | 92.4731 | 93.0337 | 86 | 11 | 86 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | D6_15 | segdup | het | 96.6292 | 93.4783 | 100.0000 | 94.4373 | 86 | 6 | 86 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | func_cds | het | 96.0894 | 100.0000 | 92.4731 | 62.6506 | 85 | 0 | 86 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4887 | 91.5094 | 95.5556 | 87.2521 | 97 | 9 | 86 | 4 | 2 | 50.0000 | |