PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53451-53500 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | * | 79.0476 | 72.8070 | 86.4583 | 98.4991 | 83 | 31 | 83 | 13 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 88.2979 | 92.2222 | 84.6939 | 93.9840 | 83 | 7 | 83 | 15 | 3 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.8095 | 97.6471 | 100.0000 | 92.0115 | 83 | 2 | 83 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.4785 | 89.5349 | 100.0000 | 78.2152 | 77 | 9 | 83 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2036 | 96.4706 | 100.0000 | 57.8680 | 82 | 3 | 83 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.7297 | 92.2222 | 87.3684 | 93.0250 | 83 | 7 | 83 | 12 | 2 | 16.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.4785 | 89.5349 | 100.0000 | 77.9841 | 77 | 9 | 83 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_siren | * | 94.8307 | 95.3488 | 94.3182 | 91.7987 | 82 | 4 | 83 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.8095 | 97.6471 | 100.0000 | 90.8891 | 83 | 2 | 83 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_siren | * | 95.3756 | 95.3488 | 95.4023 | 91.3087 | 82 | 4 | 83 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2036 | 96.4706 | 100.0000 | 57.8680 | 82 | 3 | 83 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_siren | * | 94.2920 | 95.3488 | 93.2584 | 92.8743 | 82 | 4 | 83 | 6 | 1 | 16.6667 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8095 | 97.6471 | 100.0000 | 89.8904 | 83 | 2 | 83 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | * | 95.9267 | 95.3488 | 96.5116 | 89.3696 | 82 | 4 | 83 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.2249 | 97.6471 | 98.8095 | 91.9617 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 90.2174 | 82.1782 | 100.0000 | 93.4543 | 83 | 18 | 83 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 42.8571 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 45.1613 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.8979 | 92.3913 | 95.4545 | 69.5502 | 85 | 7 | 84 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.5517 | 94.3820 | 98.8235 | 71.3805 | 84 | 5 | 84 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | func_cds | het | 98.8235 | 98.8235 | 98.8235 | 29.7521 | 84 | 1 | 84 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 66.8790 | 66.0377 | 67.7419 | 87.6000 | 35 | 18 | 84 | 40 | 3 | 7.5000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 66.6138 | 66.0377 | 67.2000 | 87.7089 | 35 | 18 | 84 | 41 | 3 | 7.3171 | |
| qzeng-custom | SNP | ti | tech_badpromoters | * | 99.4083 | 100.0000 | 98.8235 | 44.4444 | 85 | 0 | 84 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 95.7916 | 0 | 0 | 84 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | segdup | het | 97.7502 | 97.8261 | 97.6744 | 92.4495 | 90 | 2 | 84 | 2 | 0 | 0.0000 | |
| jli-custom | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.4444 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.9961 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| jpowers-varprowl | INDEL | D1_5 | func_cds | het | 93.3333 | 98.8235 | 88.4211 | 41.7178 | 84 | 1 | 84 | 11 | 10 | 90.9091 | |
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 89.2812 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 89.0886 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.5926 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 45.1613 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.5000 | 86.5979 | 88.4211 | 95.7342 | 84 | 13 | 84 | 11 | 3 | 27.2727 | |
| gduggal-bwavard | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 57.1429 | 94.8112 | 0 | 0 | 84 | 63 | 9 | 14.2857 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 49.1296 | 32.8185 | 97.6744 | 58.8517 | 85 | 174 | 84 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 92.7039 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | het | 94.5127 | 91.5493 | 97.6744 | 86.4139 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | het | 94.5127 | 91.5493 | 97.6744 | 86.6460 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 77.2602 | 64.3939 | 96.5517 | 88.2749 | 85 | 47 | 84 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | * | 88.8889 | 100.0000 | 80.0000 | 62.3656 | 85 | 0 | 84 | 21 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 72.9338 | 86.2903 | 63.1579 | 90.1262 | 107 | 17 | 84 | 49 | 4 | 8.1633 | |
| gduggal-bwafb | INDEL | * | map_siren | hetalt | 81.9967 | 71.2551 | 96.5517 | 92.6020 | 176 | 71 | 84 | 3 | 3 | 100.0000 | |
| ckim-vqsr | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.8052 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_siren | * | 97.0895 | 96.5116 | 97.6744 | 93.2230 | 83 | 3 | 84 | 2 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 45.5128 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 84.4221 | 86.5979 | 82.3529 | 95.1126 | 84 | 13 | 84 | 18 | 6 | 33.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 88.5445 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.8052 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 91.9499 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |