PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53251-53300 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 48.1928 | 95.6316 | 0 | 0 | 80 | 86 | 9 | 10.4651 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 45.4545 | 89.5238 | 0 | 0 | 80 | 96 | 28 | 29.1667 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | * | 71.7489 | 70.1754 | 73.3945 | 86.6585 | 80 | 34 | 80 | 29 | 19 | 65.5172 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e0 | * | 60.6061 | 43.4783 | 100.0000 | 98.7326 | 80 | 104 | 80 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 9.8376 | 5.2308 | 82.4742 | 81.6635 | 51 | 924 | 80 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | het | 90.4649 | 88.0435 | 93.0233 | 92.0149 | 81 | 11 | 80 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.1125 | 69.4915 | 31.2500 | 41.9501 | 41 | 18 | 80 | 176 | 164 | 93.1818 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 72.5395 | 63.7097 | 84.2105 | 99.9318 | 79 | 45 | 80 | 15 | 12 | 80.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | * | 95.0594 | 92.6829 | 97.5610 | 90.7240 | 76 | 6 | 80 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 72.3514 | 82.3529 | 64.5161 | 94.3197 | 84 | 18 | 80 | 44 | 4 | 9.0909 | |
| gduggal-bwafb | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 52.3810 | 80 | 0 | 80 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e0 | * | 77.6699 | 63.4921 | 100.0000 | 95.8506 | 80 | 46 | 80 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3415 | 92.9412 | 100.0000 | 56.2842 | 79 | 6 | 80 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5000 | 86.0465 | 100.0000 | 77.2080 | 74 | 12 | 80 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3415 | 92.9412 | 100.0000 | 56.0440 | 79 | 6 | 80 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.3992 | 85.8491 | 86.9565 | 83.3031 | 91 | 15 | 80 | 12 | 5 | 41.6667 | |
| egarrison-hhga | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.6173 | 80 | 0 | 80 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1595 | 97.5610 | 98.7654 | 93.1414 | 80 | 2 | 80 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.8876 | 91.9540 | 87.9121 | 95.3737 | 80 | 7 | 80 | 11 | 4 | 36.3636 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | * | 96.9697 | 97.5610 | 96.3855 | 94.3422 | 80 | 2 | 80 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | homalt | 70.1754 | 54.0541 | 100.0000 | 79.5396 | 80 | 68 | 80 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.4855 | 86.9565 | 98.7654 | 53.7143 | 80 | 12 | 80 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.4317 | 91.9540 | 83.3333 | 94.2618 | 80 | 7 | 80 | 16 | 4 | 25.0000 | |
| astatham-gatk | INDEL | I6_15 | segdup | het | 97.5610 | 96.3855 | 98.7654 | 93.9052 | 80 | 3 | 80 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | func_cds | het | 90.3955 | 94.1176 | 86.9565 | 42.5000 | 80 | 5 | 80 | 12 | 8 | 66.6667 | |
| asubramanian-gatk | INDEL | D1_5 | map_siren | hetalt | 97.5610 | 95.2381 | 100.0000 | 90.8987 | 80 | 4 | 80 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.9091 | 84.2105 | 98.7654 | 91.5361 | 80 | 15 | 80 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3415 | 92.9412 | 100.0000 | 58.7629 | 79 | 6 | 80 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.5252 | 93.1034 | 91.9540 | 99.8905 | 81 | 6 | 80 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | map_siren | hetalt | 97.5610 | 98.7654 | 96.3855 | 74.6177 | 80 | 1 | 80 | 3 | 2 | 66.6667 | |
| ckim-dragen | SNP | tv | map_siren | hetalt | 97.5610 | 98.7654 | 96.3855 | 74.6177 | 80 | 1 | 80 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.3855 | 91.9540 | 86.9565 | 95.3252 | 80 | 7 | 80 | 12 | 4 | 33.3333 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 74.7664 | 96.5316 | 0 | 0 | 80 | 27 | 2 | 7.4074 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.7643 | 96.2963 | 95.2381 | 82.0896 | 26 | 1 | 80 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.7161 | 93.1034 | 96.3855 | 99.8898 | 81 | 6 | 80 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 25.3240 | 74.5098 | 15.2542 | 84.3039 | 76 | 26 | 81 | 450 | 7 | 1.5556 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | * | 96.4286 | 95.2941 | 97.5904 | 93.1800 | 81 | 4 | 81 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 97.0060 | 98.7805 | 95.2941 | 94.2138 | 81 | 1 | 81 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | segdup | het | 97.0060 | 97.5904 | 96.4286 | 95.3203 | 81 | 2 | 81 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | het | 78.3734 | 80.4348 | 76.4151 | 94.8494 | 74 | 18 | 81 | 25 | 8 | 32.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.1463 | 87.3563 | 91.0112 | 82.7519 | 76 | 11 | 81 | 8 | 7 | 87.5000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.2194 | 94.2529 | 94.1860 | 99.8927 | 82 | 5 | 81 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | * | het | 47.4725 | 44.4444 | 50.9434 | 97.6237 | 4 | 5 | 81 | 78 | 5 | 6.4103 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e1 | * | 77.5120 | 63.2812 | 100.0000 | 95.9008 | 81 | 47 | 81 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m1_e0 | homalt | 58.0645 | 40.9091 | 100.0000 | 94.7641 | 81 | 117 | 81 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.3286 | 98.2456 | 96.4286 | 95.0059 | 56 | 1 | 81 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 19.3536 | 10.8571 | 89.0110 | 49.7238 | 19 | 156 | 81 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 80.3116 | 70.0000 | 94.1860 | 83.6812 | 42 | 18 | 81 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | * | 60.9023 | 43.7838 | 100.0000 | 98.7465 | 81 | 104 | 81 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 60.7839 | 44.6237 | 95.2941 | 48.1707 | 83 | 103 | 81 | 4 | 4 | 100.0000 | |