PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53201-53250 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 70.3008 | 79 | 2 | 79 | 0 | 0 | ||
| dgrover-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.4026 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 70.3008 | 79 | 2 | 79 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | * | 95.1063 | 93.9024 | 96.3415 | 90.6712 | 77 | 5 | 79 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 93.5396 | 91.9540 | 95.1807 | 99.8965 | 80 | 7 | 79 | 4 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 93.5396 | 91.9540 | 95.1807 | 99.8985 | 80 | 7 | 79 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 86.8132 | 90.8046 | 83.1579 | 94.5371 | 79 | 8 | 79 | 16 | 4 | 25.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 90.6760 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.7055 | 91.7647 | 100.0000 | 59.8985 | 78 | 7 | 79 | 0 | 0 | ||
| jlack-gatk | SNP | * | tech_badpromoters | homalt | 99.3711 | 98.7500 | 100.0000 | 48.0263 | 79 | 1 | 79 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.8262 | 71.8519 | 64.2276 | 75.9766 | 97 | 38 | 79 | 44 | 37 | 84.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.1947 | 74.8148 | 88.7640 | 73.9003 | 101 | 34 | 79 | 10 | 8 | 80.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 90.8046 | 90.8046 | 90.8046 | 92.7980 | 79 | 8 | 79 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 85.4054 | 78.2178 | 94.0476 | 93.8641 | 79 | 22 | 79 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.0779 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 48.3871 | 80 | 0 | 80 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.0779 | 80 | 1 | 80 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 94.1176 | 97.5610 | 90.9091 | 93.6462 | 80 | 2 | 80 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.1392 | 83.7209 | 100.0000 | 77.1429 | 72 | 14 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 49.3671 | 80 | 0 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | tech_badpromoters | homalt | 98.7654 | 100.0000 | 97.5610 | 49.3827 | 80 | 0 | 80 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.8876 | 91.9540 | 87.9121 | 92.2421 | 80 | 7 | 80 | 11 | 2 | 18.1818 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e0 | * | 98.7654 | 97.5610 | 100.0000 | 90.1599 | 80 | 2 | 80 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.3978 | 91.9540 | 85.1064 | 93.2713 | 80 | 7 | 80 | 14 | 3 | 21.4286 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 79.4582 | 83.0189 | 76.1905 | 81.2500 | 88 | 18 | 80 | 25 | 25 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | * | 76.7503 | 68.1034 | 87.9121 | 83.6036 | 79 | 37 | 80 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | * | 76.7503 | 68.1034 | 87.9121 | 83.9789 | 79 | 37 | 80 | 11 | 10 | 90.9091 | |
| ltrigg-rtg2 | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 48.0519 | 80 | 0 | 80 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | tech_badpromoters | homalt | 99.3789 | 100.0000 | 98.7654 | 50.6098 | 80 | 0 | 80 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | * | 95.1278 | 93.9024 | 96.3855 | 91.2262 | 77 | 5 | 80 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.0403 | 0 | 0 | 80 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 90.3955 | 88.8889 | 91.9540 | 93.3231 | 80 | 10 | 80 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.8239 | 84.8837 | 100.0000 | 75.5352 | 73 | 13 | 80 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.8127 | 85.8491 | 96.3855 | 84.5149 | 91 | 15 | 80 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.8889 | 91.9540 | 86.0215 | 94.9264 | 80 | 7 | 80 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3415 | 92.9412 | 100.0000 | 54.5455 | 79 | 6 | 80 | 0 | 0 | ||
| jli-custom | SNP | * | map_siren | hetalt | 98.7654 | 98.7654 | 98.7654 | 71.5789 | 80 | 1 | 80 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_siren | hetalt | 98.7654 | 98.7654 | 98.7654 | 71.5789 | 80 | 1 | 80 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | homalt | 95.8084 | 94.1176 | 97.5610 | 87.9412 | 80 | 5 | 80 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.2036 | 96.4706 | 100.0000 | 88.0419 | 82 | 3 | 80 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | tech_badpromoters | homalt | 96.9697 | 100.0000 | 94.1176 | 62.7193 | 80 | 0 | 80 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 21.0208 | 18.3844 | 24.5399 | 66.7686 | 66 | 293 | 80 | 246 | 190 | 77.2358 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | het | 78.8177 | 75.4717 | 82.4742 | 97.1579 | 80 | 26 | 80 | 17 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 58.8919 | 70.3704 | 50.6329 | 68.7129 | 57 | 24 | 80 | 78 | 56 | 71.7949 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | homalt | 95.2381 | 94.1176 | 96.3855 | 88.5675 | 80 | 5 | 80 | 3 | 1 | 33.3333 | |