PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53151-53200 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | map_siren | hetalt | 96.3415 | 97.5309 | 95.1807 | 83.3333 | 79 | 2 | 79 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | homalt | 81.1033 | 68.8073 | 98.7500 | 97.0105 | 75 | 34 | 79 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 72.9452 | 79 | 2 | 79 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | het | 58.7361 | 41.5789 | 100.0000 | 99.0493 | 79 | 111 | 79 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | * | 70.5357 | 55.2448 | 97.5309 | 95.0185 | 79 | 64 | 79 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 96.4583 | 96.5753 | 96.3415 | 31.6667 | 564 | 20 | 79 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 53.3784 | 38.5366 | 86.8132 | 64.4531 | 79 | 126 | 79 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 53.3784 | 38.5366 | 86.8132 | 64.4531 | 79 | 126 | 79 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 72.9452 | 79 | 2 | 79 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 72.7828 | 81.3725 | 65.8333 | 95.3952 | 83 | 19 | 79 | 41 | 9 | 21.9512 | |
| jli-custom | INDEL | I16_PLUS | map_siren | * | 94.5527 | 90.6977 | 98.7500 | 90.1840 | 78 | 8 | 79 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3287 | 89.4737 | 97.5309 | 91.1087 | 85 | 10 | 79 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 23.0412 | 16.2978 | 39.3035 | 77.1850 | 81 | 416 | 79 | 122 | 119 | 97.5410 | |
| jpowers-varprowl | SNP | * | tech_badpromoters | homalt | 98.7500 | 98.7500 | 98.7500 | 50.6173 | 79 | 1 | 79 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.7105 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | tech_badpromoters | homalt | 99.3711 | 98.7500 | 100.0000 | 48.7013 | 79 | 1 | 79 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | tech_badpromoters | homalt | 98.7500 | 98.7500 | 98.7500 | 50.9202 | 79 | 1 | 79 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1366 | 96.3415 | 100.0000 | 89.8718 | 79 | 3 | 79 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.7807 | 89.4737 | 96.3415 | 89.6985 | 85 | 10 | 79 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.0000 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 95.7389 | 0 | 0 | 79 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 87.6755 | 81 | 1 | 79 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.2551 | 87.6404 | 95.1807 | 72.6974 | 78 | 11 | 79 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | segdup | het | 94.0117 | 93.9759 | 94.0476 | 91.1765 | 78 | 5 | 79 | 5 | 5 | 100.0000 | |
| mlin-fermikit | SNP | * | tech_badpromoters | homalt | 95.1807 | 98.7500 | 91.8605 | 44.8718 | 79 | 1 | 79 | 7 | 6 | 85.7143 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | * | 94.0476 | 92.9412 | 95.1807 | 40.7143 | 79 | 6 | 79 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | homalt | 47.1642 | 40.9326 | 55.6338 | 80.3051 | 79 | 114 | 79 | 63 | 60 | 95.2381 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.2655 | 90.8046 | 87.7778 | 94.9153 | 79 | 8 | 79 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D1_5 | map_siren | hetalt | 96.9325 | 94.0476 | 100.0000 | 90.6176 | 79 | 5 | 79 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 32.6491 | 36.5854 | 29.4776 | 59.7598 | 75 | 130 | 79 | 189 | 100 | 52.9101 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 32.6491 | 36.5854 | 29.4776 | 59.7598 | 75 | 130 | 79 | 189 | 100 | 52.9101 | |
| bgallagher-sentieon | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.9522 | 71.7391 | 87.7778 | 55.4455 | 66 | 26 | 79 | 11 | 10 | 90.9091 | |
| asubramanian-gatk | INDEL | I6_15 | segdup | het | 97.5309 | 95.1807 | 100.0000 | 94.6038 | 79 | 4 | 79 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.7105 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 60.8555 | 82.6087 | 48.1707 | 53.0086 | 76 | 16 | 79 | 85 | 74 | 87.0588 | |
| astatham-gatk | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 69.1406 | 79 | 2 | 79 | 0 | 0 | ||
| astatham-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 69.1406 | 79 | 2 | 79 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 93.5396 | 91.9540 | 95.1807 | 99.8945 | 80 | 7 | 79 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 89.6507 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.9524 | 49.6815 | 72.4771 | 51.3393 | 78 | 79 | 79 | 30 | 29 | 96.6667 | |
| ckim-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | hetalt | 74.9736 | 61.3636 | 96.3415 | 86.1252 | 81 | 51 | 79 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | homalt | 64.7541 | 48.1707 | 98.7500 | 85.5596 | 79 | 85 | 79 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.0698 | 75 | 1 | 79 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | * | 82.7225 | 90.8046 | 75.9615 | 95.2140 | 79 | 8 | 79 | 25 | 4 | 16.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | * | 96.9325 | 96.3415 | 97.5309 | 93.1646 | 79 | 3 | 79 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.4026 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |