PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53051-53100 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 72.9858 | 93.9024 | 59.6899 | 69.3587 | 77 | 5 | 77 | 52 | 48 | 92.3077 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.1220 | 76.2376 | 74.0385 | 94.4710 | 77 | 24 | 77 | 27 | 17 | 62.9630 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 79.8653 | 67.0588 | 98.7179 | 91.2752 | 57 | 28 | 77 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.9858 | 100.0000 | 57.4627 | 71.8487 | 74 | 0 | 77 | 57 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e1 | homalt | 80.0247 | 88.0597 | 73.3333 | 77.5641 | 59 | 8 | 77 | 28 | 3 | 10.7143 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | het | 88.4651 | 96.1538 | 81.9149 | 90.0529 | 75 | 3 | 77 | 17 | 8 | 47.0588 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_siren | hetalt | 95.1069 | 92.8571 | 97.4684 | 93.2536 | 78 | 6 | 77 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6522 | 95.0617 | 96.2500 | 69.2308 | 77 | 4 | 77 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.5882 | 83.6957 | 98.7179 | 55.6818 | 77 | 15 | 77 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | segdup | het | 98.1509 | 97.5904 | 98.7179 | 90.0383 | 81 | 2 | 77 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.4785 | 91.6667 | 97.4684 | 62.0192 | 77 | 7 | 77 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7711 | 88.5057 | 97.4684 | 85.1504 | 77 | 10 | 77 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.1652 | 96.3415 | 86.5169 | 61.6379 | 79 | 3 | 77 | 12 | 12 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 79.6787 | 78.3505 | 81.0526 | 92.1811 | 76 | 21 | 77 | 18 | 9 | 50.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 53.0409 | 42.6966 | 70.0000 | 56.1753 | 76 | 102 | 77 | 33 | 31 | 93.9394 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 55.2682 | 73.5849 | 44.2529 | 77.4611 | 78 | 28 | 77 | 97 | 94 | 96.9072 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 72.3005 | 66.3793 | 79.3814 | 88.9647 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 72.3005 | 66.3793 | 79.3814 | 89.1134 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | hetalt | 95.6522 | 91.6667 | 100.0000 | 89.9478 | 77 | 7 | 77 | 0 | 0 | ||
| jlack-gatk | SNP | * | tech_badpromoters | het | 95.6522 | 100.0000 | 91.6667 | 50.5882 | 77 | 0 | 77 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.1243 | 93.9024 | 88.5057 | 75.9669 | 77 | 5 | 77 | 10 | 10 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.5349 | 93.9024 | 85.5556 | 75.6098 | 77 | 5 | 77 | 13 | 13 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6364 | 89.6552 | 87.6404 | 92.1793 | 78 | 9 | 78 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 89.3151 | 78 | 6 | 78 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.0833 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.0833 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | hetalt | 95.7055 | 92.8571 | 98.7342 | 91.2804 | 78 | 6 | 78 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.2082 | 72.8625 | 82.1053 | 86.6197 | 196 | 73 | 78 | 17 | 10 | 58.8235 | |
| ltrigg-rtg2 | SNP | tv | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.4897 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | * | 56.5892 | 42.9348 | 82.9787 | 91.5996 | 79 | 105 | 78 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | * | 56.3873 | 42.7027 | 82.9787 | 91.9105 | 79 | 106 | 78 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 60.2317 | 54.9296 | 66.6667 | 46.3303 | 78 | 64 | 78 | 39 | 38 | 97.4359 | |
| mlin-fermikit | INDEL | I1_5 | map_siren | hetalt | 82.7225 | 70.5357 | 100.0000 | 83.1169 | 79 | 33 | 78 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | * | 76.2909 | 67.5439 | 87.6404 | 81.8367 | 77 | 37 | 78 | 11 | 10 | 90.9091 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.9064 | 92.1348 | 100.0000 | 61.9512 | 82 | 7 | 78 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.4897 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 66.0697 | 66.0377 | 66.1017 | 87.0756 | 35 | 18 | 78 | 40 | 3 | 7.5000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e0 | * | 98.7654 | 97.5610 | 100.0000 | 88.0734 | 80 | 2 | 78 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1366 | 96.3415 | 100.0000 | 67.5000 | 79 | 3 | 78 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 86.6667 | 93.7931 | 0 | 1 | 78 | 12 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 91.2281 | 89.6552 | 92.8571 | 92.4866 | 78 | 9 | 78 | 6 | 2 | 33.3333 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.6364 | 95.1220 | 82.9787 | 75.7106 | 78 | 4 | 78 | 16 | 16 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.1132 | 96.2963 | 100.0000 | 78.9189 | 78 | 3 | 78 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_siren | hetalt | 98.1132 | 96.2963 | 100.0000 | 69.5312 | 78 | 3 | 78 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_siren | hetalt | 98.1132 | 96.2963 | 100.0000 | 69.5312 | 78 | 3 | 78 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.1508 | 86.6667 | 87.6404 | 95.9118 | 78 | 12 | 78 | 11 | 3 | 27.2727 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 94.4860 | 90.5882 | 98.7342 | 94.0242 | 77 | 8 | 78 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 26.7404 | 22.0721 | 33.9130 | 42.0655 | 49 | 173 | 78 | 152 | 131 | 86.1842 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 30.5882 | 23.0769 | 45.3488 | 45.7413 | 39 | 130 | 78 | 94 | 74 | 78.7234 | |
| anovak-vg | INDEL | D6_15 | segdup | het | 75.5396 | 76.0870 | 75.0000 | 93.8242 | 70 | 22 | 78 | 26 | 20 | 76.9231 | |