PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52951-53000 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 96.8071 | 95.0000 | 98.6842 | 92.0000 | 57 | 3 | 75 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 50.5051 | 47.7707 | 53.5714 | 69.8925 | 75 | 82 | 75 | 65 | 61 | 93.8462 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | het | 72.0679 | 93.5897 | 58.5938 | 93.8343 | 73 | 5 | 75 | 53 | 38 | 71.6981 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.2093 | 86.2069 | 88.2353 | 95.4955 | 75 | 12 | 75 | 10 | 3 | 30.0000 | |
| asubramanian-gatk | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 51.9231 | 75 | 2 | 75 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.5455 | 75 | 1 | 75 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l250_m2_e0 | * | 59.4374 | 62.8319 | 56.3910 | 96.6841 | 71 | 42 | 75 | 58 | 33 | 56.8966 | |
| astatham-gatk | INDEL | * | map_l250_m0_e0 | * | 90.3614 | 96.1538 | 85.2273 | 97.7873 | 75 | 3 | 75 | 13 | 2 | 15.3846 | |
| astatham-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 55.0898 | 75 | 1 | 75 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 90.5824 | 75 | 1 | 75 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 50.9804 | 75 | 2 | 75 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 72.1154 | 94.9392 | 0 | 0 | 75 | 29 | 27 | 93.1034 | |
| egarrison-hhga | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 91.7481 | 75 | 1 | 75 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | * | 79.6555 | 76.2887 | 83.3333 | 87.4652 | 74 | 23 | 75 | 15 | 11 | 73.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 95.4357 | 97.1831 | 93.7500 | 89.2905 | 69 | 2 | 75 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 95.4357 | 97.1831 | 93.7500 | 89.5288 | 69 | 2 | 75 | 5 | 4 | 80.0000 | |
| dgrover-gatk | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 51.9231 | 75 | 2 | 75 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 55.0898 | 75 | 1 | 75 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 60.8295 | 43.7086 | 100.0000 | 34.7826 | 66 | 85 | 75 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m0_e0 | * | 87.2093 | 96.1538 | 79.7872 | 98.4545 | 75 | 3 | 75 | 19 | 1 | 5.2632 | |
| ckim-vqsr | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.8193 | 75 | 1 | 75 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_siren | hetalt | 96.2025 | 93.8272 | 98.7013 | 75.7098 | 76 | 5 | 76 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_siren | hetalt | 96.2025 | 93.8272 | 98.7013 | 75.7098 | 76 | 5 | 76 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | het | 89.7285 | 86.9565 | 92.6829 | 92.5319 | 80 | 12 | 76 | 6 | 6 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.1212 | 87.3563 | 97.4359 | 84.8544 | 76 | 11 | 76 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.8272 | 90.4762 | 97.4359 | 61.7647 | 76 | 8 | 76 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 80.0602 | 87.5000 | 73.7864 | 75.5344 | 56 | 8 | 76 | 27 | 2 | 7.4074 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 79.7203 | 87.6923 | 73.0769 | 77.0925 | 57 | 8 | 76 | 28 | 3 | 10.7143 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.8529 | 96.7213 | 95.0000 | 65.6652 | 59 | 2 | 76 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 93.0501 | 95.7746 | 90.4762 | 89.6552 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 93.0501 | 95.7746 | 90.4762 | 89.8673 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.7170 | 82.1053 | 85.3933 | 87.5698 | 78 | 17 | 76 | 13 | 5 | 38.4615 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 31.8686 | 65.5405 | 21.0526 | 51.2162 | 97 | 51 | 76 | 285 | 285 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.4359 | 100.0000 | 95.0000 | 83.9034 | 74 | 0 | 76 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 85.7143 | 75.0000 | 100.0000 | 63.1068 | 81 | 27 | 76 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3630 | 92.5926 | 96.2025 | 76.1329 | 75 | 6 | 76 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 50.0000 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | tech_badpromoters | het | 95.5975 | 98.7013 | 92.6829 | 49.3827 | 76 | 1 | 76 | 6 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | tech_badpromoters | homalt | 98.0970 | 97.5000 | 98.7013 | 46.1538 | 78 | 2 | 76 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.1803 | 85.0575 | 89.4118 | 82.8629 | 74 | 13 | 76 | 9 | 8 | 88.8889 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 95.9052 | 0 | 0 | 76 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.4762 | 60.4839 | 73.7864 | 99.9217 | 75 | 49 | 76 | 27 | 19 | 70.3704 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 21.4797 | 14.7388 | 39.5833 | 70.4160 | 79 | 457 | 76 | 116 | 116 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l250_m0_e0 | * | 92.1212 | 97.4359 | 87.3563 | 97.7177 | 76 | 2 | 76 | 11 | 1 | 9.0909 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2025 | 93.8272 | 98.7013 | 77.4854 | 76 | 5 | 76 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 56.1111 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.1212 | 87.3563 | 97.4359 | 84.8544 | 76 | 11 | 76 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 63.2280 | 46.5116 | 98.7013 | 74.5875 | 80 | 92 | 76 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.4233 | 67.8571 | 98.7013 | 83.6518 | 76 | 36 | 76 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | tech_badpromoters | * | 93.8272 | 89.4118 | 98.7013 | 57.6923 | 76 | 9 | 76 | 1 | 0 | 0.0000 | |