PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52801-52850 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I6_15 | segdup | * | 45.2111 | 40.5714 | 51.0490 | 89.3838 | 71 | 104 | 73 | 70 | 55 | 78.5714 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 53.9587 | 55.9055 | 52.1429 | 46.7681 | 71 | 56 | 73 | 67 | 51 | 76.1194 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.2663 | 99.4083 | 61.8644 | 83.3568 | 168 | 1 | 73 | 45 | 44 | 97.7778 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | het | 91.8695 | 97.4359 | 86.9048 | 95.6967 | 76 | 2 | 73 | 11 | 2 | 18.1818 | |
| astatham-gatk | SNP | * | tech_badpromoters | het | 97.3333 | 94.8052 | 100.0000 | 51.6556 | 73 | 4 | 73 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_siren | het | 91.8695 | 97.4359 | 86.9048 | 96.2700 | 76 | 2 | 73 | 11 | 2 | 18.1818 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | hetalt | 75.4294 | 62.0968 | 96.0526 | 85.1852 | 77 | 47 | 73 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | het | 92.4513 | 97.4359 | 87.9518 | 96.3127 | 76 | 2 | 73 | 10 | 2 | 20.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m0_e0 | * | 90.1235 | 93.5897 | 86.9048 | 97.9749 | 73 | 5 | 73 | 11 | 2 | 18.1818 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.3333 | 98.6486 | 96.0526 | 81.1414 | 73 | 1 | 73 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | * | map_l250_m0_e0 | * | 92.9936 | 93.5897 | 92.4051 | 99.7821 | 73 | 5 | 73 | 6 | 1 | 16.6667 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.8937 | 73.5294 | 92.4051 | 90.6509 | 75 | 27 | 73 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | * | map_l250_m0_e0 | * | 92.4051 | 93.5897 | 91.2500 | 97.4416 | 73 | 5 | 73 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | * | tech_badpromoters | * | 97.9866 | 96.0526 | 100.0000 | 53.7975 | 73 | 3 | 73 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.4859 | 71.5686 | 97.3333 | 92.8910 | 73 | 29 | 73 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | tech_badpromoters | * | 97.9866 | 96.0526 | 100.0000 | 52.9032 | 73 | 3 | 73 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 87.9518 | 83.9080 | 92.4051 | 83.8776 | 73 | 14 | 73 | 6 | 4 | 66.6667 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.5706 | 83.9080 | 96.0526 | 84.2975 | 73 | 14 | 73 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9936 | 86.9048 | 100.0000 | 60.1093 | 73 | 11 | 73 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9936 | 86.9048 | 100.0000 | 59.8901 | 73 | 11 | 73 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l250_m0_e0 | * | 92.4051 | 93.5897 | 91.2500 | 97.0717 | 73 | 5 | 73 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9936 | 86.9048 | 100.0000 | 61.1702 | 73 | 11 | 73 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 27.4510 | 74 | 0 | 74 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.8789 | 71.8519 | 92.5000 | 74.9216 | 97 | 38 | 74 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.1224 | 74 | 0 | 74 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.6970 | 85.0575 | 94.8718 | 84.4000 | 74 | 13 | 74 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | tech_badpromoters | * | 98.6667 | 97.3684 | 100.0000 | 53.4591 | 74 | 2 | 74 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 28.8462 | 74 | 0 | 74 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.1887 | 74 | 0 | 74 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.9278 | 74 | 0 | 74 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l250_m0_e0 | * | 82.6816 | 94.8718 | 73.2673 | 98.2753 | 74 | 4 | 74 | 27 | 1 | 3.7037 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.2536 | 98.2249 | 47.7419 | 79.1667 | 166 | 3 | 74 | 81 | 79 | 97.5309 | |
| jlack-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.8411 | 74 | 0 | 74 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2967 | 74 | 0 | 74 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.8786 | 74 | 0 | 74 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.0000 | 74 | 0 | 74 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 21.2766 | 74 | 0 | 74 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 79.1195 | 85.0000 | 74.0000 | 91.9094 | 51 | 9 | 74 | 26 | 1 | 3.8462 | |
| mlin-fermikit | INDEL | D1_5 | func_cds | homalt | 99.3289 | 100.0000 | 98.6667 | 21.0526 | 74 | 0 | 74 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.5414 | 91.4634 | 100.0000 | 66.2100 | 75 | 7 | 74 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5238 | 74 | 0 | 74 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.0742 | 74 | 0 | 74 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 94.8718 | 94.2605 | 0 | 0 | 74 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 94.8718 | 94.2605 | 0 | 0 | 74 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 83.8710 | 72.2222 | 100.0000 | 64.4231 | 78 | 30 | 74 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 33.9286 | 74 | 0 | 74 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.0388 | 74 | 0 | 74 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | tech_badpromoters | het | 98.0132 | 96.1039 | 100.0000 | 48.2517 | 74 | 3 | 74 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4528 | 1 | 0 | 74 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 45.2330 | 51.6779 | 40.2174 | 66.9659 | 77 | 72 | 74 | 110 | 110 | 100.0000 | |