PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52601-52650 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | het | 65.0768 | 88.4615 | 51.4706 | 92.9130 | 69 | 9 | 70 | 66 | 34 | 51.5152 | |
| gduggal-bwaplat | INDEL | D1_5 | func_cds | homalt | 97.2222 | 94.5946 | 100.0000 | 23.9130 | 70 | 4 | 70 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 76.4120 | 9 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 77.3885 | 20 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | tech_badpromoters | * | 78.6517 | 100.0000 | 64.8148 | 71.8750 | 72 | 0 | 70 | 38 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 45.6361 | 81.6092 | 31.6742 | 99.7077 | 71 | 16 | 70 | 151 | 4 | 2.6490 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | het | 87.6125 | 93.5897 | 82.3529 | 95.8313 | 73 | 5 | 70 | 15 | 2 | 13.3333 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.5946 | 93.3333 | 95.8904 | 61.3757 | 70 | 5 | 70 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.3481 | 68.6275 | 88.6076 | 92.5047 | 70 | 32 | 70 | 9 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | het | 92.2299 | 93.5897 | 90.9091 | 94.3672 | 73 | 5 | 70 | 7 | 1 | 14.2857 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 80.9524 | 70 | 4 | 70 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | het | 91.6263 | 93.5897 | 89.7436 | 94.0321 | 73 | 5 | 70 | 8 | 2 | 25.0000 | |
| raldana-dualsentieon | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 49.6454 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8323 | 77.7778 | 90.9091 | 89.6644 | 70 | 20 | 70 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | het | 85.1770 | 77.4648 | 94.5946 | 79.8365 | 55 | 16 | 70 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | het | 85.1770 | 77.4648 | 94.5946 | 79.9458 | 55 | 16 | 70 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | het | 79.3149 | 91.4894 | 70.0000 | 89.2473 | 43 | 4 | 70 | 30 | 19 | 63.3333 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 42.2961 | 66.6667 | 30.9735 | 85.3532 | 34 | 17 | 70 | 156 | 39 | 25.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m1_e0 | * | 58.7189 | 62.2642 | 55.5556 | 96.4296 | 66 | 40 | 70 | 56 | 31 | 55.3571 | |
| anovak-vg | SNP | * | tech_badpromoters | homalt | 94.1001 | 90.0000 | 98.5915 | 33.0189 | 72 | 8 | 70 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | tech_badpromoters | * | 89.2841 | 83.5294 | 95.8904 | 38.1356 | 71 | 14 | 70 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.5982 | 99.4083 | 63.6364 | 84.3528 | 168 | 1 | 70 | 40 | 39 | 97.5000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 54.9995 | 46.4968 | 67.3077 | 47.2081 | 73 | 84 | 70 | 34 | 26 | 76.4706 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | * | 75.4516 | 68.9320 | 83.3333 | 89.1892 | 71 | 32 | 70 | 14 | 12 | 85.7143 | |
| asubramanian-gatk | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 53.5948 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 53.5948 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2603 | 95.9459 | 98.6111 | 81.3953 | 71 | 3 | 71 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2603 | 95.9459 | 98.6111 | 80.4878 | 71 | 3 | 71 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.9459 | 94.6667 | 97.2603 | 65.5660 | 71 | 4 | 71 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 53.5912 | 38.5935 | 87.6543 | 68.1102 | 225 | 358 | 71 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 32.7901 | 97.1831 | 19.7222 | 22.4138 | 69 | 2 | 71 | 289 | 266 | 92.0415 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | * | 95.1569 | 95.6522 | 94.6667 | 96.8867 | 44 | 2 | 71 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | het | 93.2430 | 96.8750 | 89.8734 | 86.2609 | 62 | 2 | 71 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.0863 | 74.0741 | 82.5581 | 65.0407 | 60 | 21 | 71 | 15 | 14 | 93.3333 | |
| gduggal-snapfb | INDEL | * | map_siren | hetalt | 66.5492 | 57.0850 | 79.7753 | 93.0196 | 141 | 106 | 71 | 18 | 14 | 77.7778 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | * | 58.6777 | 41.5205 | 100.0000 | 98.7278 | 71 | 100 | 71 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m1_e0 | * | 76.7568 | 62.2807 | 100.0000 | 92.9703 | 71 | 43 | 71 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e0 | het | 85.5348 | 98.5915 | 75.5319 | 93.2325 | 70 | 1 | 71 | 23 | 16 | 69.5652 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e1 | het | 85.0227 | 98.5915 | 74.7368 | 93.3287 | 70 | 1 | 71 | 24 | 17 | 70.8333 | |
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | * | 95.9459 | 98.6111 | 93.4211 | 57.0621 | 71 | 1 | 71 | 5 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.6129 | 84.5238 | 100.0000 | 54.1935 | 71 | 13 | 71 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_siren | het | 96.0512 | 94.8718 | 97.2603 | 93.9167 | 74 | 4 | 71 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 58.6592 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.3082 | 81.6092 | 98.6111 | 83.0588 | 71 | 16 | 71 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.0237 | 77.1739 | 92.2078 | 54.4379 | 71 | 21 | 71 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.5441 | 77.1084 | 98.6111 | 27.2727 | 64 | 19 | 71 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l250_m0_e0 | * | 91.6129 | 91.0256 | 92.2078 | 98.2130 | 71 | 7 | 71 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 85.9341 | 80.4598 | 92.2078 | 71.1610 | 70 | 17 | 71 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 60.4255 | 44.0994 | 95.9459 | 40.8000 | 71 | 90 | 71 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2603 | 95.9459 | 98.6111 | 81.4433 | 71 | 3 | 71 | 1 | 1 | 100.0000 | |